Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04348 CTGTGTGCATTCCTTCCAACAAAGGATGAGTGGCAAACATAGGCTTCTGCATTATCTAAGAATTTTGGATCGTGAATCCGAACTCGAAGCTGATGATATATTGGAGAAGAGCATATGCATTTGGTGCGATGAGAAGGAACCTTTGGTTTGCAGCGAAAGGGGCTGCCCCGTCAGCGTCCACGCCAGCTGTCTCGTCTCCGAGCCTCAATTCGACGATTCCGGTAACTTCTTCTGTCCCTACTGCTGGTTCAAGCGTGCCGTCCACACGTGTCGCCGCCCACGCTTTTTGGACGTGGACCACGCACGTGTGGATTCTGCTGGTGCGCGTGTGAGCGTTGTTGATAGGGAGGAAATTGAAGAGGACGCACGTGTGAGTGCTGATTACAGTGGTGGTGCCGCACGTGTGAACTCCGGTGGGGATAGGGAAGAAATTGTGGAGGACGCACGTGTGAGTGCGGATTGTAACGGTGGTGGTGCACTTGTGAACCACGATGGGGATAGGGAAGAAATTGTGGAGGATGCACGTGTGAGTGCGGATTGTAATGGTGGTGGTGCTGCTGCTTCTGCACGTGTGAACCGTGATCGGGTTAGGGAGGAAAATGTGGAGGAAGCACGTGTGGATGCGGACTCTTGTGGTGGAGGTGCTGCACGTGTGGAGCCGGATCAGGGTTCTGAAGAAATAGTGGAGGAGAGTGAAACAGAAAAATCTGGAGAGAATAAGGATGAAGGGAAGGTGTATGTGACGAGTAGTTCTGTGAGTGAGACCAATGATTCTGAATCTGAGGCTGTAATTAAGAAGAAGAAGAAGAAGAAAAGGAAGCATGAGAAGAAGTTGGTTGGTTTGAAAAGGAAATCGGTGTTGCAAGAAGAGCGTGATAACAAGCATAACAACAATAGAGTGAAATCTGCGGATGAGGAGGAAGTTACCAGCTTACGAAATTTGAGGCAGCAACCACAGAGAATGAAATTGACCGCAAAGCGTAGGAGATTGCTTTGGACAGCTGAAGAAGAAAAGGTTCTCAAGGAAGGAGTATCGAAGTTCTCAACAGAAAATCAGAATATCCCTTGGAGGAAAATTTTGGAATTTGGTTGCCGTGTATTTGATAAGACTCGTACTCCTGTTGATCTTAAGGATAAATGGAAGAATATTATCTCCAAGGAAGGTTGGAAGAATTAAACAGAAAATGGGTATAAGACCAGTGGCATTGGAACATAAAAGTATACCCTTATGAGGGATGTGGGGTGGTGCTTGTCTTGCCTACAAAGACCTCTATGCAGCAAATTCTTCAGGACATGATCCAACCATGTCATCAAAATTGCAAGTTAACTCGTAAAATTGTACGAGTTTACAAGCTCCTGACAAATTAAATCACACGTAGAATCAGA 1386 0.4661 MSGKHRLLHYLRILDRESELEADDILEKSICIWCDEKEPLVCSERGCPVSVHASCLVSEPQFDDSGNFFCPYCWFKRAVHTCRRPRFLDVDHARVDSAGARVSVVDREEIEEDARVSADYSGGAARVNSGGDREEIVEDARVSADCNGGGALVNHDGDREEIVEDARVSADCNGGGAAASARVNRDRVREENVEEARVDADSCGGGAARVEPDQGSEEIVEESETEKSGENKDEGKVYVTSSSVSETNDSESEAVIKKKKKKKRKHEKKLVGLKRKSVLQEERDNKHNNNRVKSADEEEVTSLRNLRQQPQRMKLTAKRRRLLWTAEEEKVLKEGVSKFSTENQNIPWRKILEFGCRVFDKTRTPVDLKDKWKNIISKEGWKN 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04348 383 SUPERFAMILY FYVE/PHD zinc finger 26 76 IPR011011 -
Pste1g04348 383 SUPERFAMILY Homeodomain-like 319 377 IPR009057 -
Pste1g04348 383 Pfam Myb-like DNA-binding domain 324 375 IPR001005 -
Pste1g04348 383 SMART sant 320 378 IPR001005 -
Pste1g04348 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 316 380 IPR017930 -
Pste1g04348 383 MobiDBLite consensus disorder prediction 235 250 - -
Pste1g04348 383 MobiDBLite consensus disorder prediction 193 315 - -
Pste1g04348 383 Coils Coil 256 276 - -
Pste1g04348 383 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 19 379 - -
Pste1g04348 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 105 IPR013083 -
Pste1g04348 383 Gene3D - 313 377 - -
Pste1g04348 383 CDD SANT_TRF 324 376 - -
Pste1g04348 383 ProSitePatterns Zinc finger PHD-type signature. 31 73 IPR019786 -
Pste1g04348 383 MobiDBLite consensus disorder prediction 257 272 - -
Pste1g04348 383 ProSiteProfiles Myb-like domain profile. 316 376 IPR001005 -
Pste1g04348 383 MobiDBLite consensus disorder prediction 273 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04348 Pste-Chr1 28952087 28957688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04348 321 381 Single Myb Histone (SMH) Gene Family AT3G49850 45.161 9.13e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pste1g04348 Myb_DNA-binding 1.3e-06 CL0123