Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04291 TTCCAGGGAAAAGTTTTGCTAAGATGCCAGGAAAGACTGAAATCGATGATTGTCATGTAGAGTGTGGCGAGCAGATTCTGTTTCCACCTCAGTCTTCCAGTTACTCTCATCATCAGCCTTTGTGGCATGGAGCTGGGGAAAGTAGCTCCAAATATCCTTCAGCTGATCAGTTAAATGGTTCATTCATGAATGGTGCCATGTCCTCCCTTTCCAATGAAGAAGGGTTAGCTGATGGAATTGATTTCAGTGAGCAAAGGCCTATGGTTTTTCCTTCACTGTCTGGCGGAGGAGTTGAAGAAGAATACCAAAACATGAAACAGCCCATGTTTTCAACGACATTTTTCATGGACAAACATCTTGTTCCAAGTCCCCATATGGAACATTTTGGTCATTCAGCTGTTTTAACACCTCCTTGTTCACATGCACACTATGGTCAAGTGTTGACTCCATACGGGCAACAAGTTATGATGAACCCTCCGTCTTATGGAGTGCTTCATGCAAGAATGCCTTTGCCACTTAAGATGGAAGATGAGCCTGTTTATGTCAATGCAAAGCAGTACCATGGTATCTTGAGGCGAAGACAGTCTCGTGCTAAAGCTGAGCTTGACAAGAAAGTAACTAAAAATAGAAAGCCATACCTCCATGAATCTCGTCACCTACATGCCATGAGAAGGGCAAGAGGCATTGGAGGTCGCTTCATCAACACAAAGAAGCTTGAAGATAACAATTCTAATGCCACTTCAAGCCAAGCCAACAATGCTGGTGCAAACTCTTCTTCCACAGATTCCTTTAACACTCAGCATTTGCTTACTAACAGTGAGAATCTAAGCTCGTTGAAGTCTCTAAGCTCGTTGAAGTCTGCAGTTCAAGACATGCACAGAATGCAGAATTTCAACCTTAGTTACCATAACGGGAATGGTGTTACAACCCTGTACCATTCACAAGCAAATGGGAAAAGGGAGGAAGACTATTTTGACATAGAGAAGGATCCCAAGGAAGATGATGAAGGGCTTTTTCTCCAACTTGTGATGCTGTATTTGAAGGCAATTCATTCTTGGCTTAGTTAAGTGTGCGGTGTGACCAGTGACATACTACACTCTATGCCTTGTTTGGTTCTCTCCCGTTGTTTTCATTTCCTTTTCCTTTAAAA 1150 0.427 MPGKTEIDDCHVECGEQILFPPQSSSYSHHQPLWHGAGESSSKYPSADQLNGSFMNGAMSSLSNEEGLADGIDFSEQRPMVFPSLSGGGVEEEYQNMKQPMFSTTFFMDKHLVPSPHMEHFGHSAVLTPPCSHAHYGQVLTPYGQQVMMNPPSYGVLHARMPLPLKMEDEPVYVNAKQYHGILRRRQSRAKAELDKKVTKNRKPYLHESRHLHAMRRARGIGGRFINTKKLEDNNSNATSSQANNAGANSSSTDSFNTQHLLTNSENLSSLKSLSSLKSAVQDMHRMQNFNLSYHNGNGVTTLYHSQANGKREEDYFDIEKDPKEDDEGLFLQLVMLYLKAIHSWLS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04291 347 Gene3D - 168 229 - -
Pste1g04291 347 PRINTS CCAAT-binding transcription factor subunit B signature 171 193 IPR001289 GO:0003700|GO:0006355
Pste1g04291 347 PRINTS CCAAT-binding transcription factor subunit B signature 202 225 IPR001289 GO:0003700|GO:0006355
Pste1g04291 347 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 170 225 IPR001289 GO:0003700|GO:0006355
Pste1g04291 347 ProSitePatterns NF-YA/HAP2 subunit signature. 173 193 IPR018362 GO:0003677|GO:0016602
Pste1g04291 347 ProSiteProfiles NF-YA/HAP2 family profile. 168 228 IPR001289 GO:0003700|GO:0006355
Pste1g04291 347 SMART cbf3 167 228 IPR001289 GO:0003700|GO:0006355
Pste1g04291 347 MobiDBLite consensus disorder prediction 231 257 - -
Pste1g04291 347 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 48 282 IPR001289 GO:0003700|GO:0006355
Pste1g04291 347 MobiDBLite consensus disorder prediction 25 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04291 Pste-Chr1 27684705 27687494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04291 100 258 CCAAT-HAP2 Transcription Factor Family AT5G12840 45.000 7.86e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pste1g04291 CBFB_NFYA 2.9e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g04291 1 27684705 27687494 Pste1g04291 1 27684705 27687494 ECH