Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04278 GCAAATGAGGAAACCTGAACTCATGGCCAACAAGGACAAAATGAACAACATTAAGAGCAAGTTGAGAAAAGGGTTGTGGTCACCAGATGAAGATGAGAGGCTCATAAGGTACATGCTGACAAATGGACAAGGGTGTTGGAGTGACATTGCTAGAAATGCTGGTCTTCAAAGGTGTGGCAAAAGTTGCCGTCTTCGTTGGATTAATTACTTGAGACCTGACCTTAAACGTGGTGCATTCTCACCTCAAGAGGAGGATCTCATTATTCATTTGCATTCTATTCTTGAATCTCTTCAATTTGTTGTAAATCTCAGGTGGTCTCAGATTGCAGCACGTCTCCCTGGCCGCACAGACAATGAGATAAAGAATTTTTGGAACTCCACATTGAAGAAAAGGTTGAAAACTAACACTTCTACTCCCTCTCTAAACAACAGCGCTGACTCATCAGAGTCCAAGGATGTTTTGAGTGGGATGATGCCCTTTAATGAACATGACATCATGACAATGTGCATGGACTCCTCTTCATCCATATCCGCAATGGCTTTGCCTGACCAATTTGACCCCTTTTCCATGTTGGCAAATAATCAGCGTGACATGACTAATATTGTGTCATCAGATTTTCCCAACATGCCTGCTGCATGCTTGACTCACATTGGCATGGTAGATGGGGATCAAGGGAATTATGGGATGTTGGAGCCAAACAAAATGGGGTTAGGAAGAGACTTCTCACTTCCTTCACTAGAAAGTAGAAGCATTGAAAGCAATAGTGTCCCAATTGATGTGAAAAGCCATAACAACCACTTCAATTATGGTTCCTTCAATAACACTGAAAAGATTCAAAGCTCCAAAGTAGAGGACTCAATTGGGTTTGGAAATCATGGCCAAGGAGAAAATTTTAAAATTGGAGAGTGGGATTTGGAGAATTTGATGCAAGACATAACCTCTTTTCCTTTCCTTGAATTT 961 0.4142 MRKPELMANKDKMNNIKSKLRKGLWSPDEDERLIRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIHLHSILESLQFVVNLRWSQIAARLPGRTDNEIKNFWNSTLKKRLKTNTSTPSLNNSADSSESKDVLSGMMPFNEHDIMTMCMDSSSSISAMALPDQFDPFSMLANNQRDMTNIVSSDFPNMPAACLTHIGMVDGDQGNYGMLEPNKMGLGRDFSLPSLESRSIESNSVPIDVKSHNNHFNYGSFNNTEKIQSSKVEDSIGFGNHGQGENFKIGEWDLENLMQDITSFPFLEF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04278 319 FunFam MYB transcription factor 19 75 - -
Pste1g04278 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 73 IPR017930 -
Pste1g04278 319 SMART sant 21 71 IPR001005 -
Pste1g04278 319 SMART sant 74 129 IPR001005 -
Pste1g04278 319 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Pste1g04278 319 Pfam Myb-like DNA-binding domain 75 126 IPR001005 -
Pste1g04278 319 Gene3D - 76 153 - -
Pste1g04278 319 SUPERFAMILY Homeodomain-like 20 123 IPR009057 -
Pste1g04278 319 CDD SANT 25 69 IPR001005 -
Pste1g04278 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 131 IPR017930 -
Pste1g04278 319 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Pste1g04278 319 Gene3D - 19 75 - -
Pste1g04278 319 PANTHER MYB DOMAIN PROTEIN 55 15 260 - -
Pste1g04278 319 ProSiteProfiles Myb-like domain profile. 70 127 IPR001005 -
Pste1g04278 319 CDD SANT 77 127 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04278 Pste-Chr1 27428935 27430645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04278 1 319 MYB Transcription Factor Family AT3G08500 46.111 1.01e-78 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste1g04278 Myb_DNA-bind_6 1e-12 CL0123