Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04272 GGAACCCAAAAAAAAAGTTTTTTTTTGGTTTTCTCACAACACTGCAATCTCATCCTTCTCCTTTTCCTTCCCAATTTTTTCTTCAATCTCACATCATCCCACACCAAAATTGCAAACATTTATTTTCAAAATCATATTTTTATTAAAAAAACTTAAGGCTAAACCTGGTTTTCTGTCGGATTCGAAGGCTGTCTCTGCGGTTCTGTTTTTCGTTCCTTTTAAGAATCTGTTGCGCAAGGCAGTGTTTGGTAACGTGTAATGTGCCCCTTTGTTCGTTTTTTGTGCAGTTGTTGTTGAAGGGTATATAGTGTGTAGTGTGGTGGTTTTTTCTTCTTCATAGTGCAAAATGAATGATGGGAGACAAATGGGGGTGCATTATGTAGACGCTGGGTTCCCTTATGCTGTTAATGAAAACTTTGTGGATTTCTTTCAAGGATTCACTCATGTGCCCGTGAATTATGCCTTTGCTGGCTCAATGCCCGATCAGGAAAGTGTCTACTGGTCAATGAACATGAATCCCTATAAGTTTGGATTGTCTGGCCCAGGGAGTACATCTTACTATAGTTCTTATGAGGTAAATGGTCATTTGCCGAGAATGGAGATTGATAGGGCTGAGTGGGAATACCCTTCAACAATTAACACTGTGGAAGCTACAACGGATTCTCCACCTAGAAGAGATGGAGTCACAAGCATGCAGACCATCCCTGAAGAATGCAGTCCAAATCATCATGAGTCCAATAGTACTAGCCAGGAACTACTGGACCTGGGGGAGGCAGTTGGGACTCAGAGCAGAGGTCTTTCACAAGAACTTATTGATATGCTTCCAACCTCAAAGTACAAATTTGGTAGCTTATTCAAAAGAAGAAATTCTGGGAAAAGGTGTGTAATTTGTCAGATGACATATAGAAGAGGTGATCAGCAAATGAAATTGCCATGCAGCCATGTCTATCATGGTGAATGCATCACCAAGTGGCTTGGAATTAACAAGAAATGTCCTGTTTGCAACACTGAGGTTTTTGGCGAGGAATCAACTCACTAGCATCAAGATGGCAAAAGGGACCCTTTTTGCTCTATTAATTTTTGCTTCTCATCCAACTCTCTCTCTCTCTTTCTCTTTAAGTTTTAGTTCCTTACACGTAGGTAGGTGTAGTATGCAGAACTATGGCAGTTCTCACACAATATATGTTTTGTTTACTAGAAACAACCTAATGGAGTTGCATCTTCTAGTGGTTAATGTGTGATTTTGTGTGTATTCATGCAATATATTCTCTTAGCTTTGTGTCCCCCTTTTTTGGTATTTGGTATTTTAGCATTCATCAACATAGATGTGTTGGCATTTGGGAGTAACAAATCATAAGCATGCTTGATGGATTGAAAACTGAAATTCGTTTGTGGAATTCTCATGGATGTGGAGGTCTTAGTTTGAGAAACTTCGAAAATCAATTATGCTG 1451 0.3942 MNDGRQMGVHYVDAGFPYAVNENFVDFFQGFTHVPVNYAFAGSMPDQESVYWSMNMNPYKFGLSGPGSTSYYSSYEVNGHLPRMEIDRAEWEYPSTINTVEATTDSPPRRDGVTSMQTIPEECSPNHHESNSTSQELLDLGEAVGTQSRGLSQELIDMLPTSKYKFGSLFKRRNSGKRCVICQMTYRRGDQQMKLPCSHVYHGECITKWLGINKKCPVCNTEVFGEESTH 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04272 230 SMART ring_2 179 219 IPR001841 -
Pste1g04272 230 Pfam Ring finger domain 178 220 IPR001841 -
Pste1g04272 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 224 IPR013083 -
Pste1g04272 230 SUPERFAMILY RING/U-box 173 224 - -
Pste1g04272 230 ProSiteProfiles Zinc finger RING-type profile. 179 220 IPR001841 -
Pste1g04272 230 FunFam E3 ubiquitin ligase BIG BROTHER 141 224 - -
Pste1g04272 230 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 226 IPR033276 GO:0004842|GO:0016567|GO:0046621
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04272 Pste-Chr1 27337118 27344334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04272 9 230 C3H Transcription Factor Family AT3G63530 50.000 1.26e-85 253