Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04270 ATGACAGATCCTAAGTCCAATTTGTTCCATGAATGGTTCAACTTCATGCTCCTCCACCCTCACTACTCTTCTTCTCTTCAATCCTACCCTCTTGCTAATTACTCAAACAATAACAGGTTTGGAATTCAATTACAAGGACCCTCATCTTCATCTTCATCTTCCTATGCAGCTCCTCCTTCATCCCCTCCCTTAAGAGAGGCCCTTCCTCTAATCAACAAGATAAGCCTCACAAGTGAGCAGCAACACCAACAAAATGATGAACCCTCCTCAAATGTTGTACAAGAGAAGGAAGAGAACAACAAAAAGGATGAGAGTGGTGATGAAGAAACTGTGACTGTTGCCCTACACATAGGGCTGCCTAGAATGGATACTTCTTCTTCTGATCTGGGGTCATCAAGGGTGGTCTCAACTTGTATGGAAATGGGTGAAAAAGAGGAAGTGAATATGATTTCTGAAAAGCCTTTGGATAGATTGAACAAGGGTCAGTATTGGATTCCCACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTCCCATGTCCTGTGTGCTCTAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTAAAAGGAACACAACCAACAGCTATGTTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACTCTTCAAACACATTACAAGAGAAAGCATGGCATAAAACCCTACATGTGCAGAAAATGTGGCAAAGCATTTGCAGTAAAAGGTGATTGGAGAACACATGAGAAGAACTGTGGCAAAATATGGTATTGTTTATGTGGGTCTGATTTCAAACACAAAAGGTCCCTAAAAGACCACATCAAGGCCTTTGGCTATGGCCATGGTGCTTTTGCCATTGATTGCTTGCAAGATGAAGATGAAGCAGCCTCTGAAATTGAACATGATGGGGAGAGTTCAATGTGA 1020 0.4255 MTDPKSNLFHEWFNFMLLHPHYSSSLQSYPLANYSNNNRFGIQLQGPSSSSSSSYAAPPSSPPLREALPLINKISLTSEQQHQQNDEPSSNVVQEKEENNKKDESGDEETVTVALHIGLPRMDTSSSDLGSSRVVSTCMEMGEKEEVNMISEKPLDRLNKGQYWIPTPSQILIGPTQFPCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFAIDCLQDEDEAASEIEHDGESSM 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04270 339 Gene3D Classic Zinc Finger 240 313 - -
Pste1g04270 339 FunFam zinc finger protein WIP2-like 177 200 - -
Pste1g04270 339 MobiDBLite consensus disorder prediction 42 66 - -
Pste1g04270 339 MobiDBLite consensus disorder prediction 42 59 - -
Pste1g04270 339 Gene3D Classic Zinc Finger 177 200 - -
Pste1g04270 339 SMART c2h2final6 262 282 IPR013087 -
Pste1g04270 339 SMART c2h2final6 178 200 IPR013087 -
Pste1g04270 339 FunFam Zinc finger protein WIP2 231 313 - -
Pste1g04270 339 Pfam C2H2-type zinc finger 178 197 - -
Pste1g04270 339 ProSitePatterns Zinc finger C2H2 type domain signature. 180 200 IPR013087 -
Pste1g04270 339 SUPERFAMILY beta-beta-alpha zinc fingers 174 200 IPR036236 -
Pste1g04270 339 MobiDBLite consensus disorder prediction 91 110 - -
Pste1g04270 339 SUPERFAMILY beta-beta-alpha zinc fingers 246 282 IPR036236 -
Pste1g04270 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 282 IPR013087 -
Pste1g04270 339 PANTHER ZINC FINGER PROTEIN WIP2 36 333 IPR043584 GO:0003700|GO:0010468
Pste1g04270 339 MobiDBLite consensus disorder prediction 78 110 - -
Pste1g04270 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 205 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04270 Pste-Chr1 27247073 27249513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04270 1 332 C2H2 Transcription Factor Family AT3G57670 54.178 1.77e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste1g04270 zf-C2H2_6 2.7e-05 CL0361