Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04231 ATCATGGACCTTGGCCTAACCTTAGGACACACTTCAAGGCCTTTCAGGTTCATGGAAAAGCCTCATGAAGATTCCAACCAACTTGGATTATCCTTCAACACCACCTTATCGATTGGTCCACTAGTTACCAAACAAATAGATCAACACCATGAGCAAGAAGAAATACCAATACCAAACCAAAAACACATAGACAATAGTCACAATCACTACACTATAGAAGAAGATCATCATGATGAAGCTACAAGTGAATTATCTTCCCTTGTTAGTTCTTCTCCCAAAGACACTAATAACACAGTTTTGCAGCTTGATCTTCTTCCTCTCACACCTGCCGACGCTCCTTTGAACCCACCTTTCAACTTCTTCTCGTGGGATCCTCTTTTAGAAAACGAAGGAAGAAGTTCAAGGGGATTGGAGGTGAACAAGGTGGTGCCGGCAGCGGTGGTGACAGTGGCCATGACGGCGGTGGAGGAAGTAGTGGTGTCACCGTCCTCAAACAGTGCAGCTGCAACGTTTCAGATGGACCTCTGCATGTTCAGCAGAGGAAGGAGTATGAGTGGTGAGGATGTTGATGAAAGGCAAATGGAGGAAGTGATGAAGATGAAAACAGTGGCAGTGGCAAAGCAAAAGCTTGCTCTGGCTAAACAACTGCATCTTCGGCCTCGACAAGTAGAAGTATGGTTCCAAAACAGAAGAGCAAGGACTAAGTTGAAGCAGAAAGAGATGGACTGTGAGTACTTGAAGAAGTGTTGTGAAACACTTAGAGAAGAGAATAGAAGGCTTCAAAAGGAGCTTCAAGAATTGAGGGTTTTGAAGACTTTAGACCCTTTCTGTATGCATATGCCTGCCACAACCTTGACCATGTGTCCATCCTGTGAGCGTATGGCCACTAATTCCAACACCACAACTAGTCCATCTAGTACTGTTGTCACTGCAAAAACCATTCATCATGAACCAGTTACCTCCAAAGTCATTGAATTCCAAATTGGCAGACCCAAGTTTTATGATCCACACCCTCAAAAGTCACACCAACCCACCACCCTAAAAAATCTTGAGTAA 1056 0.4413 IMDLGLTLGHTSRPFRFMEKPHEDSNQLGLSFNTTLSIGPLVTKQIDQHHEQEEIPIPNQKHIDNSHNHYTIEEDHHDEATSELSSLVSSSPKDTNNTVLQLDLLPLTPADAPLNPPFNFFSWDPLLENEGRSSRGLEVNKVVPAAVVTVAMTAVEEVVVSPSSNSAAATFQMDLCMFSRGRSMSGEDVDERQMEEVMKMKTVAVAKQKLALAKQLHLRPRQVEVWFQNRRARTKLKQKEMDCEYLKKCCETLREENRRLQKELQELRVLKTLDPFCMHMPATTLTMCPSCERMATNSNTTTSPSSTVVTAKTIHHEPVTSKVIEFQIGRPKFYDPHPQKSHQPTTLKNLE 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04231 351 SMART halz 237 280 IPR003106 GO:0006355|GO:0043565
Pste1g04231 351 ProSitePatterns 'Homeobox' domain signature. 212 235 IPR017970 GO:0000981|GO:0006355
Pste1g04231 351 SUPERFAMILY Homeodomain-like 195 246 IPR009057 -
Pste1g04231 351 MobiDBLite consensus disorder prediction 75 95 - -
Pste1g04231 351 Coils Coil 243 273 - -
Pste1g04231 351 MobiDBLite consensus disorder prediction 332 351 - -
Pste1g04231 351 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 193 313 - -
Pste1g04231 351 Gene3D - 188 242 - -
Pste1g04231 351 CDD homeodomain 207 238 IPR001356 GO:0003677
Pste1g04231 351 Pfam Homeodomain 204 235 IPR001356 GO:0003677
Pste1g04231 351 CDD bZIP 230 268 - -
Pste1g04231 351 ProSiteProfiles 'Homeobox' domain profile. 194 237 IPR001356 GO:0003677
Pste1g04231 351 SMART HOX_1 179 241 IPR001356 GO:0003677
Pste1g04231 351 Pfam Homeobox associated leucine zipper 237 269 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04231 Pste-Chr1 26650560 26653870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04231 194 336 Homeobox Transcription Factor Family AT4G37790 56.164 5.39e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste1g04231 HALZ 7.9e-07 No_clan