Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04227 ATGGAGCTTGATTTGAATCAGGAGCCTTCAAACCCAACTCATCCTTCTCAAGAACAACTTGATTCTTTGTTAGAAGAACTGGAATCTACCCAAGAACACGTGCAAGAACGTATCAGGCGCCTTGAAGTGATAACTTCTAGAGGCAGGCAGTATCAAAGGCGGCCATTGCTTCGCACCCCAATCCAAACAACCAACTTTACAGGGCAAGCCAGTGCTAGAGCTGATGCTCACAATGAAGGAATAGAGAGCCAAGAAGTTGAGGAAAGAGTCTTTGAAAATGGAAAAGGGTGCAAAAGGAAAAGGTACCATTTAATAGGTAAGGCTTTGGGGGTTGAAGCTGATGCCAGTGATGAAGGGGGAAGTTCTAGAGATTTCTATGATTGCAATATATGCTTGGACAGGGCAAGAGATCCTATATTGACTTGTTGTGGTCACTTGTTTTGTTGGCCATGCTTCTATCGGGTCCCATATGCTTCTCGGAATGCGAGGGAGTGCCCTGTTTGTAAAGGGGAGCTCACTGAAAATGGGATTATTCCGATTTATGGCAACACAAGTGACAATGGCAGGTGTGATTCAGGATTAGAAGCTGGTTTGAAAATCCCTCCTCGACCTGCTGCCCCTAGAATGGAGAGTTTTAGGCAGCAACTAATAAGCCAGGGTGTACCTTCTTCTATAATTCAACATATCCAGCAGATTAATGATCTTATTGGTGGGTTAGGAGTGCAATTTCTGTCACAAAATCCCAATACTACAACTCATAGAAATAATAGTTTGTTAGTTCAACCTCGCCCGCAGATAGGCAATGGTCGCAGTACTGCTTCCTCTCCATCTCCAATTTCAACCTTGTTAGTGCAAAGAGCTACTTCATTTTCATCCCTCTATACGGCATTAAGTTCTGCAATGCAATCTGCTGAAAGATTAGTTGAGGACCTTGAGTCATATATCCATGTCAATAGAAACTCCATTCCTAATGTGAATGTTGCTGCCACTAATTCTACAAATGCTCCTTTTGTTAGGAATGTTGTTGACACCACTCCTGAGATCTTTGTAGAAATTATGGGAACAAATAGCAACAGAGAGGTTGAGACTAGTTTATTGGACCATTCTTCATCTCAAAGTGGAAGCACATATGTTTCATCTTCAGGACCAGTTTCAAATGATAGCAGAAGAAGGAGGACAAGATAA 1185 0.4236 MELDLNQEPSNPTHPSQEQLDSLLEELESTQEHVQERIRRLEVITSRGRQYQRRPLLRTPIQTTNFTGQASARADAHNEGIESQEVEERVFENGKGCKRKRYHLIGKALGVEADASDEGGSSRDFYDCNICLDRARDPILTCCGHLFCWPCFYRVPYASRNARECPVCKGELTENGIIPIYGNTSDNGRCDSGLEAGLKIPPRPAAPRMESFRQQLISQGVPSSIIQHIQQINDLIGGLGVQFLSQNPNTTTHRNNSLLVQPRPQIGNGRSTASSPSPISTLLVQRATSFSSLYTALSSAMQSAERLVEDLESYIHVNRNSIPNVNVAATNSTNAPFVRNVVDTTPEIFVEIMGTNSNREVETSLLDHSSSQSGSTYVSSSGPVSNDSRRRRTR 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04227 394 MobiDBLite consensus disorder prediction 1 21 - -
Pste1g04227 394 MobiDBLite consensus disorder prediction 366 394 - -
Pste1g04227 394 ProSiteProfiles Zinc finger RING-type profile. 128 169 IPR001841 -
Pste1g04227 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 86 292 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pste1g04227 394 SUPERFAMILY RING/U-box 122 176 - -
Pste1g04227 394 SMART ring_2 128 168 IPR001841 -
Pste1g04227 394 MobiDBLite consensus disorder prediction 252 277 - -
Pste1g04227 394 Coils Coil 17 44 - -
Pste1g04227 394 MobiDBLite consensus disorder prediction 366 386 - -
Pste1g04227 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 182 IPR013083 -
Pste1g04227 394 Pfam zinc-RING finger domain 128 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04227 Pste-Chr1 26618547 26619731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04227 61 216 C3H Transcription Factor Family AT3G58030 39.744 2.72e-32 124