Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04220 ATGGAAAGAGAGTTTGAGAACATAAAGAAGGGGCCATGGAGTAGTGATGAAGATGAGGTGTTGTTGAGACATGTCACCAAATATGGTCCAAGGGAATGGAGCTCCATTCGATCCAAAGGCTTGTTGCCTCGTACAGGAAAATCTTGTCGCCTTAGATGGGTTAACAAACTTAGACCAAACTTGAAGACTGGATGCAAGTTTACAGCAGAAGAAGAAAGGTTGGTGATAGAATTACAGACACAGTTTGGGAACAAATGGGCCAAAATTGCAACGTATTTGCAAGGGAGAACCGACAATGATGTGAAAAACTTCTGGAGCAGTAGGAGAAAGAAGTTGGAGAGGATGTTGCACAAGCCACCATCATCGAAGGGGCAAAAAAACAAAGGAAAAACTCCTCTTAATCAAGTGCAAGTGGAAAAGGTACAGGTTCATGATATCCTTTTACTTAAAGTGAAAAACATCAATTTCCCTTTTGTTATTTGA 483 0.4079 MEREFENIKKGPWSSDEDEVLLRHVTKYGPREWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKTGCKFTAEEERLVIELQTQFGNKWAKIATYLQGRTDNDVKNFWSSRRKKLERMLHKPPSSKGQKNKGKTPLNQVQVEKVQVHDILLLKVKNINFPFVI 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04220 160 PANTHER TRANSCRIPTION FACTOR DUO1 3 138 - -
Pste1g04220 160 Pfam Myb-like DNA-binding domain 66 106 IPR001005 -
Pste1g04220 160 CDD SANT 66 105 IPR001005 -
Pste1g04220 160 CDD SANT 12 57 IPR001005 -
Pste1g04220 160 SUPERFAMILY Homeodomain-like 7 105 IPR009057 -
Pste1g04220 160 Gene3D - 1 63 - -
Pste1g04220 160 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 113 IPR017930 -
Pste1g04220 160 FunFam MYB transcription factor 10 62 - -
Pste1g04220 160 ProSiteProfiles Myb-like domain profile. 66 109 IPR001005 -
Pste1g04220 160 FunFam Transcription factor GAMYB 65 133 - -
Pste1g04220 160 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 53 IPR017930 -
Pste1g04220 160 MobiDBLite consensus disorder prediction 113 133 - -
Pste1g04220 160 Gene3D - 65 140 - -
Pste1g04220 160 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Pste1g04220 160 SMART sant 63 111 IPR001005 -
Pste1g04220 160 SMART sant 9 59 IPR001005 -
Pste1g04220 160 Pfam Myb-like DNA-binding domain 13 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04220 Pste-Chr1 26566929 26567615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04220 1 117 MYB Transcription Factor Family AT3G60460 78.632 5.41e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste1g04220 Myb_DNA-bind_6 8.3e-11 CL0123