Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04199 TTCAGACAGAGCTGTTAGTTCAAGCTCAGTTGACCCATGGATTTGCAGCCTTGTCTCCATCTTTACAAAGTGGTTTCAGACAAATTTTAGAAACAACACCCACCTTGAATAATAATAAAGCAATCACAGTTCAAAAGTTACATTAATGAAGAAATATTTGAACACTAAATTCTTAGAATTTCCCATTGCTTAAGGATGATCCCTCGTTACGATTCTTCCTAGGGTTTCTCTAAGTCAATTCCCATGGCTATTAGAGGCATCGATTTCAAGTGGTATGATGGGTTCTTCTTGTCCATGCTCGCCACCAGTGTGTATCCTTTAGTTATTGTGGCAATTAATTGGAAGCGGTATCATTCTTGTACATATCCGTTGCACATATGGATTGTGGTAGACTACACTACTGTGTTTGTTTTCCGGCTCTTGATGTTTGTTGATAACGGGCTTGCTGCAGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGTTGTCCTTTCAATCCTTGTCTTGCTTCTCTATCCATTTCTTTGGGCGTGGACTGTGATTGGTACCCTGTGGTTCAGCAGTGCCAAGAACTGTTTGCCTGAAGAGGGTCAAAAATGGGGCTTTCTCATCTGGTTACTTTTTAGCTACTGTGGACTCGTATGCATTGCTTGCATGTGTGTTGGGAAGTGGTTGGCACGAAGAGAAGCACATTTATTGCGTGCCCAACAGGGTATCCCGGTATCCGAATATGGGGTAAGTTTTACCTTTACTCAGTGTCAAGAAACAAGGGGAATGGGCCAAGATGCTGCTGCATATCATCCAGGACTCTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTAAAGGCGGTTCCTACAGATTGCAGTGAATGCCCCATCTGCTTAGAAGAGTTCCATGTAGGGAATGAGGTGCGTGGCCTGCCATGCGCACACAATTTTCATGTTGCATGCATTGATGAGTGGCTTAGGCTGAATGTGAAATGTCCACGTTGCCGTTGCTCAGTATTCCCAAACCTTGATCTTAGTGCACTGTCCAATCTCCGTGCCGAGCCTGAACGATCTTCTGCCAGTGTTGTGACAACAACCAGATATGTGAGGGGCCAACCATCTAGTCAAAGTTATCGGTTAAGATTGCAGGGTCTTCTGCGCCCAGTTCGTGCTGAAATTGCAGGGCCCGTTGGTGAGGCAGATAATGGGTTGGAAAATGCCGAGAATGTTGTATCAATTGTGACTCAAAATCCATCATCTGGAGATCATGTCTCTTCTATCGAATGCATGCCTGTCACTGTCACTCTTTCCTCTGCACAAAGTTAGGTTCCATTGAATTTCTATTATATTTCTAACACATTCTAGAGAAGGTGAAGAGTGCATGTCCATATCTGGCCCGTGTAAAAATGGTACACATTCTAACAAGCAATTCTCACGTTTGATCCATAAAGAATTGGGTCTTGGAGTTGTAGGACTTGAAAAATCAAAATATACCTTTTTGCTTAACTAACATAGATTAGAGCTGCAAATGTGTAATTGTCTCTTACGGTTGATAAATTGTAAAGAGAGTTTAAAATTATAATTATACATTAAATTCA 1643 0.423 MAIRGIDFKWYDGFFLSMLATSVYPLVIVAINWKRYHSCTYPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRVVVLSILVLLLYPFLWAWTVIGTLWFSSAKNCLPEEGQKWGFLIWLLFSYCGLVCIACMCVGKWLARREAHLLRAQQGIPVSEYGVSFTFTQCQETRGMGQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVACIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRAEPERSSASVVTTTRYVRGQPSSQSYRLRLQGLLRPVRAEIAGPVGEADNGLENAENVVSIVTQNPSSGDHVSSIECMPVTVTLSSAQS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04199 375 SUPERFAMILY RING/U-box 211 278 - -
Pste1g04199 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 275 IPR013083 -
Pste1g04199 375 SMART ring_2 229 269 IPR001841 -
Pste1g04199 375 ProSiteProfiles Zinc finger RING-type profile. 229 270 IPR001841 -
Pste1g04199 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 351 IPR044793 GO:0004842|GO:0010182
Pste1g04199 375 FunFam E3 ubiquitin-protein ligase SIS3 197 275 - -
Pste1g04199 375 Pfam Ring finger domain 228 270 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04199 Pste-Chr1 26261475 26267696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04199 61 343 C3H Transcription Factor Family AT3G47990 69.831 1.28e-142 405