Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04179 ATGGCTTTTACTCCTCAATTCTATTCCAACTACACACTCCCCATGGATCTCACACATGAGTTCCACAGTCCTGTGGTGGCTGCACTCACTAGCAACCCCTCAGCTATGGACAACACAATGTGGGGTCAAGATAACACCTTCATTCCTGTGCATGATAATGGAACACTTGATGATCAAATTTTGTCTCATCATCAAGATTGGGACACCATGTCTTATTGGATGCCAAATTTCTCAGAGGCTTCAGAACACAAAGTGTGCTACTATGGTGCCATTGCAGGGTTTCCTAATCTCAGTGATGGATACCAATCACAAACTGGTGAGTTTGAGGAGGATCTTAGGCAAGCTACTCATCATTCTTATAGTGCCACAGGAAACTGGGGATTCCAAGGAAATCAAATGCCAGCTATTGAAGAACCTAATATAAAGGTAGAGAGATACTCAGAAGAAGAAAGAAAGGAAAAAATTCTTCGATATTTGAAGAAAAGAAATCAAAGGAATTTTAACAAAACCATTAAGTATGCATGTCGCAAAACCTTAGCTGATAGGAGAGTAAGAGTTAGGGGAAGGTTTGCAAGAAACAATGAACTATCAGAGGAATACATGGCAAGGAAAAACCATGAAAATAATCAGAAAGAGGACTTTTATGGTGATGATTCAATCCAGTTCCAGGTAATTTTTTTATAA 684 0.3933 MAFTPQFYSNYTLPMDLTHEFHSPVVAALTSNPSAMDNTMWGQDNTFIPVHDNGTLDDQILSHHQDWDTMSYWMPNFSEASEHKVCYYGAIAGFPNLSDGYQSQTGEFEEDLRQATHHSYSATGNWGFQGNQMPAIEEPNIKVERYSEEERKEKILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELSEEYMARKNHENNQKEDFYGDDSIQFQVIFL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04179 227 ProSiteProfiles CCT domain profile. 151 193 IPR010402 GO:0005515
Pste1g04179 227 Pfam CCT motif 151 193 IPR010402 GO:0005515
Pste1g04179 227 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 38 203 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04179 Pste-Chr1 25905332 25906863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04179 116 192 Response Regulator Gene Family AT5G61380 40.260 9.85e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pste1g04179 CCT 3.9e-17 CL0281