Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04176 AGAAAAGAACAAAAAAAAAAAAAAAAAAAGAAAATGGAGTTTGATGATGATTTCAACAATAAAGATAATCATGAATGTATGGAGGATGATGAAGGTCCACTTCCTGGGTTTCGTTTCCACCCAACAGATGAAGAACTTGTAGCTTTCTATCTTCAACGGAAGCTTGATAACAAACCCATTAGTCTTGAACTCATCAAACAGATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAAGCAAGTGGTAGTGGTGGAGAGAATGAGTGGTACTTCTTTTGCAAAAGAGGGAGAAAGTATAAGAACAGCATAAGGCCTAATAGAGTCACATGTTCTGGGTGTTGGAAAGCAACTCGAATAGATAAGTCAGTGTACTCAGTTGGAGGAGATTGCATAGGACTCAAGAAAACTCTAGTTTACTACCATGGTTCTGCTGGTAAAGGAACCAAAACTAATTGGATGATGCATGAGTTTCGTCTTCCCTCTAATACTCACATCAACATTTCCCAAGATGCTGAAATTTGGACATTGTGTCGAATTTTAAAAAGAAATGTGTCACATAGAAAGTACACATTAGATTTGAGACAAGAGAAGATGACCAAAATGAAAAGTGAGGAGTTTAACAACAATGGAGAAGAGTATATCAAATTCAGTACAAGCCTTGGCCATTATTACAATGATTATAAACCTGTGATTAGCCACAACAACATAAGAAGTGATAAGCGGCATTATGATAACTTGAACTCTCAAGTGCCACAACAACCACAAATAACAACACTACCCTCTTCGAATTTCTGGATAAACCCACCAACCAACAATAACTTTTCC 828 0.3659 RKEQKKKKKKKMEFDDDFNNKDNHECMEDDEGPLPGFRFHPTDEELVAFYLQRKLDNKPISLELIKQIDIYKYDPWDLPKASGSGGENEWYFFCKRGRKYKNSIRPNRVTCSGCWKATRIDKSVYSVGGDCIGLKKTLVYYHGSAGKGTKTNWMMHEFRLPSNTHINISQDAEIWTLCRILKRNVSHRKYTLDLRQEKMTKMKSEEFNNNGEEYIKFSTSLGHYYNDYKPVISHNNIRSDKRHYDNLNSQVPQQPQITTLPSSNFWINPPTNNNFS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04176 276 MobiDBLite consensus disorder prediction 9 29 - -
Pste1g04176 276 FunFam NAC domain-containing protein 35 42 186 - -
Pste1g04176 276 MobiDBLite consensus disorder prediction 253 276 - -
Pste1g04176 276 ProSiteProfiles NAC domain profile. 33 183 IPR003441 GO:0003677|GO:0006355
Pste1g04176 276 Gene3D NAC domain 42 187 IPR036093 GO:0003677|GO:0006355
Pste1g04176 276 MobiDBLite consensus disorder prediction 1 29 - -
Pste1g04176 276 Pfam No apical meristem (NAM) protein 35 160 IPR003441 GO:0003677|GO:0006355
Pste1g04176 276 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 32 233 - -
Pste1g04176 276 SUPERFAMILY NAC domain 30 183 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04176 Pste-Chr1 25826849 25829933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04176 30 183 NAC Transcription Factor Family AT5G39820 53.977 8.76e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste1g04176 NAM 1.2e-35 No_clan