LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g04164	ATGGACAACGAAACACTTGGTCTAGCTACCTATTTTGTCACTGATACTGATAGATTGGGTGTTAGTAATGTCGGATTATTCACTGGAAGCAACAATCCTCAATACAAACATTTTGTGTCTAATCAAGTCACTGGTACTGAGGATTCAAAGCTATTCCAAACAGCTCGATTCTCTGCTTTATCACTCAGATATTATGGTCTAGAGTTGGAAAATGGCTTCTACAACATTACCCTCCAATTTGCAGAAACAATTATTTTGGATAATTTTGAATGGAGAAGTCTTGCAAGAAGAATCTTTGATATTTATATTCAAGGAAAACTTGTTTTAAAGGATTTTAATATAAAGAAGGAGGTTGGGGGAAAGTCTTTTAGTATTGTCCAAAAGAAATTTAGGGCCGAAGTGTTAGAAAATTATCTCGAGATACATTTCATTTGGGCTGGAAAAAAGACTTGTTGCATACCAACTCAAGGTACTTATGGACCCTTGATTTCAGCCATTAGTGTTATCCCAGATTTTATACGCACTGTTAGTAACAAACCTCCAAGCAGTGAAAGGAATAAAACTAGTCTAATCGTGGGAATTGTTGTTGGTGTTGGAGCTATATGCTTTCTATTGGTTCTTGCATTCTTCTATGTCAATTATAAACAAAAACGTCATGATAATAATGAAGAGCTTTTAGGCATTGACACAAAGACATACACTTTTAGTTATTCCGAGTTGAGGAGGAATGATACAGATGACTTTAATCTTAGTAACAAGCTTGGAGAGGGAGGTTTTAGGCCAGATCATAAGGGAACACTTAAGGATGGAAGAGAAATAGCAGTAAAACAATTATCTGTAAAATCCAATCAAGGAAAAAATCAGTTTGTAGTAGAAATTGCCACTATCTCTGCAGTGCAAAGTCGTAATCTTGTCAAATTATACAATTGCTGCATTGAAGGAAATAATAGACTGTTGGTCTATGAGTATCTTGAAAACAAGAGTCTTGATGAAGCACTTTTTGGCTATGATATATGTTTGGATATAGCAAGAGGTTTAACCTATCTACATGAAGAGTCACAAATCTGTATTGTACACCGTGATATGAAATCTAGTAATATTCTTCTTGATTATGAACTTATACTTAAAATATCTAATTTTGGATTGGCAAAATTATATGATGATAAAATGACCCATATAAGCACGCGTGTGGCTGACACATGTAAGTGA	1209	0.3457	MDNETLGLATYFVTDTDRLGVSNVGLFTGSNNPQYKHFVSNQVTGTEDSKLFQTARFSALSLRYYGLELENGFYNITLQFAETIILDNFEWRSLARRIFDIYIQGKLVLKDFNIKKEVGGKSFSIVQKKFRAEVLENYLEIHFIWAGKKTCCIPTQGTYGPLISAISVIPDFIRTVSNKPPSSERNKTSLIVGIVVGVGAICFLLVLAFFYVNYKQKRHDNNEELLGIDTKTYTFSYSELRRNDTDDFNLSNKLGEGGFRPDHKGTLKDGREIAVKQLSVKSNQGKNQFVVEIATISAVQSRNLVKLYNCCIEGNNRLLVYEYLENKSLDEALFGYDICLDIARGLTYLHEESQICIVHRDMKSSNILLDYELILKISNFGLAKLYDDKMTHISTRVADTCK	402

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g04164	402	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	357	369	IPR008271	GO:0004672\|GO:0006468
	Pste1g04164	402	Pfam	Protein kinase domain	249	391	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g04164	402	FunFam	Os07g0541700 protein	315	400	-	-
	Pste1g04164	402	Pfam	Malectin domain	36	166	IPR021720	-
	Pste1g04164	402	FunFam	Leucine-rich repeat receptor-like protein kinase	216	323	-	-
	Pste1g04164	402	ProSiteProfiles	Protein kinase domain profile.	248	402	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g04164	402	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	21	400	-	-
	Pste1g04164	402	SUPERFAMILY	Protein kinase-like (PK-like)	228	394	IPR011009	-
	Pste1g04164	402	Gene3D	-	6	171	-	-
	Pste1g04164	402	SMART	serkin_6	248	402	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g04164	402	Gene3D	Transferase(Phosphotransferase) domain 1	323	402	-	-
	Pste1g04164	402	Gene3D	Phosphorylase Kinase; domain 1	219	322	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g04164	Pste-Chr1	25562236	25564945	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g04164	2	400	Receptor kinase-like Gene Family	AT1G56120	55.854	6.16e-160	470

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pste1g04164		Pkinase	9.5e-25	CL0016