LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g04144	ATACTTGTGGTTGTGGTGGAGTACTTGTGTCTACCTTATTGCTGCATATAACAGTATGAAGCCGGGAGATTCACTGAACACGAAAACAGAGTTGTGTTCAGAAAATAGTAAATATTGCATGCAATTTGCCAAAATGCTTCCTGCTCGAGCTGACACCTCTTACTTGCGCATATATTTGAAAACAACTGATGACTGGGCAGTGTGGATTGGTAATAGAAATCAACCTGTTGACATGGATTCTGCAGTTCTGTTGCTAGACCATTCTGTGGGAACCAGGGAAAGAGAATTGATAATAAAACGACGAGGAAAACTGTGCTGGAGAAGTGGAGCACTGAGAGACAATACTGGAATTGTCTACAACACACGGTACACGATTGTCTCAAACGACAGTGAAAGCTCCTTCACAATTGCAAATTCAAATAATGAACAAACAATATGGAGTCTATTAGAAACTGGGCAGGTTATGAATTGGAATGGAGGTGATGTTGCTAAGGCTAATATGTGTTTTGGGTACAACACAGATAATGGCTGTCAAAAATGGGATGTTCTACCCTCCTGTAGGCATCGTGGTGATGCATTTGAAGCCAAGGAAATGTACCAAAATCAAAACGTGCAGATATATGAACTAGCTAATTCCGCACTCGGCCCTACTGATTGCCTGGCTATTTGCTGGAAAAATTGCAGTTGTGATGGATACCAAAAATATTATGATGATGGAATTGGTTGTCGATTCGTACATTTCAATTCAACGGAAGGTGCAAATTTTGCAGCTGGGGGTGATCAGTATTACATATTGTTAAGGCACTCCATTCACAATGGTAAAAAAAACTGGATATGGATATCTATTGTAATAGTAGTTGCTCTAATTGTGATATGTGCTTTCCTTGTGTATCTGAAGAGCAAACAATTCTGTCAAGGGCAGAAAAGAAAAGGCATAGAGTCTAGGATGCTTGATTCAGCAATCAAAGAGCTTGAGGATGAGTTCAAGAAGAGACAACAACTAACAGTATTTAACTATACCTTAGTTCAGTCGGCAACCAATGATTTTTCTTCAGAAAACATGTTAGGACAAGGAGGCTTTGGACCTGTTTATAAGGGAATCCTACCAAATGGGCAAGAAGCTGCAATGAAAAGACTTTCAAACACATCTAGACAAGGAATTTTGGAATTCAAAAATGAACTAATGCTTATATGTGACCTTCAGCACAAGAATCTAGTACAACTACTTGGGTGTTGTATTCATGAAGAAGAGAGGATTCTAATTTATGAATATATGCGAAACAAAAGCTTGGATTTCTATCTATTTGATTGTACTAGAAGCAAATTATTAGACTGGAAGAAGCGATTCAATATAATAGAAGGAATCTCTCAAGGATTACTTTATCTTCACCAGTACTCAAGATTGAAAGTCATTCATAGATACTTAAAAGCTAGCAATATACTTCTTGATGAGAATTTGAACCCAAAAATTTCTGATTTTGGATTGGCAAGAATGTTTACAGAACAAGAATCCACAACATTTACAAATAGGATTGTTGGGACATATGGTTATATATCTCCAGAATATGCTACAAAAGGACTTGTCTCTACAAAGTCAGATGTGTTTAGCTTTGGAGTGTTGATTCTTGAAATTGTTAGTGGAAGAAGAAATACCAGCTTCTATGACATTGATCGCCCTATGAACTTGATAGGACATACGTGGGAGTTATGGAATCAAGGTCTGACTCTACAATTAATGGATGTATCACTTAGTGATTCCTGTGATCCTGAAGAAGTGAAAAGATGCATTCACATTGGTCTCTTATGTGTAGAGCATTATGCAGATGATCGACAAACAATGTCGAATATAATTTCATTGTTAAAAAATGATGGCGCAATAGTTGTCTTGCCACGAAGACCAGCATTTTATGTGGAGAGAGAAGATTTTGAAGCAAAAACATTTTCAAACGAGTTTTGTACTGATTCTACACAGCCAATTACTACTTCTTTATACTTGGGGTTGTGGTTGTGGTTGAGTACTTATTTCCACGTTATTGCTGCATTTCACAGTTTGAAGCCTGGAGAAAAGCTGAATTCCACAAGCGAGTTGTGTTCAGACAACAGAAAATATTGCATGGGTTTTGAGAATATAAATTCCAATATTTACTTGCCAACATATTGCGCCAAATCAAATAATTTTCAGATAGTGTGGGTTGCTAATAGAAACCAACCACTTGAGAAGGATTCTGGATCAGTTCTATCGCTGGATCTCTCTGGTAATCCAATAGTTACAAAAAATCCCATCATCCTTTACTCTTCACCTCAACCATCCCACAACACTGTGACGACGTTGTTGGACGCAGGCAACTTTGTGTTGCAACAACGTCACCCTGATGCCTCGAATGGGGAACCCACGACAAGAGAAGTGGATATGTGTTATGGATACAATACTGATAACGGGTGCCAGAAATGGGAGGAGACACCTACTTGCAGGCATCGTGGTGAAGCATTTGAAGTAAAGGAAGTTTATGCCGATTCAAGCCTGATAAATGATCTGCATAATTGGAGTTATGGCTTAAGTGATTGTAGGGCTATTTGCTGGAAAAACTGCAGTTGTATTGGATATAAAGCATATTATCAAAATGAAACTGGTTGTTCATTCCTGCAATATTGGAATTCAACGCAAGATGGTGTTACTTTTGCAAATGGGGTAACAGCATCTGCACTGTTATTGATATGTACTATCAATCTATTCATGGTGTTGAGGAAAAGAAAACATATGTTAGAAGAGAAGAAAATGAAAGAAATGGAGACAAAGATTATAGATTCTACAATCAAAGCACTTGAAGATGAATTCAAGAAGAGACTAGATCTAAAAGTCTTTAACTACATCTCAGTTGTGTCGACAACGAACGATTTTTCGCTAGAAAATAAGTTAGCACAGGGAGGCTTTGGACCTGTTTATAAGATTGGAAGAAAGGTATCAGTAGAAGGAATTGCTCAAGGATTACTCTATCTTTACCAGTACTCAAGACTCAAAGTCATTCATAGAGACTTAAAATCTAGTAACATA	3052	0.3765	MKPGDSLNTKTELCSENSKYCMQFAKMLPARADTSYLRIYLKTTDDWAVWIGNRNQPVDMDSAVLLLDHSVGTRERELIIKRRGKLCWRSGALRDNTGIVYNTRYTIVSNDSESSFTIANSNNEQTIWSLLETGQVMNWNGGDVAKANMCFGYNTDNGCQKWDVLPSCRHRGDAFEAKEMYQNQNVQIYELANSALGPTDCLAICWKNCSCDGYQKYYDDGIGCRFVHFNSTEGANFAAGGDQYYILLRHSIHNGKKNWIWISIVIVVALIVICAFLVYLKSKQFCQGQKRKGIESRMLDSAIKELEDEFKKRQQLTVFNYTLVQSATNDFSSENMLGQGGFGPVYKGILPNGQEAAMKRLSNTSRQGILEFKNELMLICDLQHKNLVQLLGCCIHEEERILIYEYMRNKSLDFYLFDCTRSKLLDWKKRFNIIEGISQGLLYLHQYSRLKVIHRYLKASNILLDENLNPKISDFGLARMFTEQESTTFTNRIVGTYGYISPEYATKGLVSTKSDVFSFGVLILEIVSGRRNTSFYDIDRPMNLIGHTWELWNQGLTLQLMDVSLSDSCDPEEVKRCIHIGLLCVEHYADDRQTMSNIISLLKNDGAIVVLPRRPAFYVEREDFEAKTFSNEFCTDSTQPITTSLYLGLWLWLSTYFHVIAAFHSLKPGEKLNSTSELCSDNRKYCMGFENINSNIYLPTYCAKSNNFQIVWVANRNQPLEKDSGSVLSLDLSGNPIVTKNPIILYSSPQPSHNTVTTLLDAGNFVLQQRHPDASNGEPTTREVDMCYGYNTDNGCQKWEETPTCRHRGEAFEVKEVYADSSLINDLHNWSYGLSDCRAICWKNCSCIGYKAYYQNETGCSFLQYWNSTQDGVTFANGVTASALLLICTINLFMVLRKRKHMLEEKKMKEMETKIIDSTIKALEDEFKKRLDLKVFNYISVVSTTNDFSLENKLAQGGFGPVYKIGRKVSVEGIAQGLLYLYQYSRLKVIHRDLKSSNI	999

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g04144	999	SUPERFAMILY	alpha-D-mannose-specific plant lectins	696	771	IPR036426	-
	Pste1g04144	999	SUPERFAMILY	Protein kinase-like (PK-like)	934	999	IPR011009	-
	Pste1g04144	999	SMART	serkin_6	331	608	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g04144	999	SUPERFAMILY	Protein kinase-like (PK-like)	315	633	IPR011009	-
	Pste1g04144	999	ProSiteProfiles	Bulb-type lectin domain profile.	1	131	IPR001480	-
	Pste1g04144	999	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	407	610	-	-
	Pste1g04144	999	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	796	966	-	-
	Pste1g04144	999	Gene3D	-	658	779	IPR036426	-
	Pste1g04144	999	Pfam	Protein tyrosine and serine/threonine kinase	334	548	IPR001245	GO:0004672\|GO:0006468
	Pste1g04144	999	ProSiteProfiles	Bulb-type lectin domain profile.	663	780	IPR001480	-
	Pste1g04144	999	Pfam	D-mannose binding lectin	710	771	IPR001480	-
	Pste1g04144	999	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	295	406	-	-
	Pste1g04144	999	Gene3D	Transferase(Phosphotransferase) domain 1	407	608	-	-
	Pste1g04144	999	Gene3D	Phosphorylase Kinase; domain 1	293	406	-	-
	Pste1g04144	999	ProSiteProfiles	Protein kinase domain profile.	331	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g04144	Pste-Chr1	25108375	25121544	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g04144	307	645	Receptor kinase-like Gene Family	AT4G11480	51.613	4.34e-114	364

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pste1g04144		PK_Tyr_Ser-Thr	4.1e-43	CL0016