Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04122 CAATTTTGCAATTCTTCACTCTCTTCCAAAACCCTACCCTTTCTCAAATAATGTTCCTTGTTATTTCTCCAACATAGCAAGGCCTGTGAGAATTAACAGAGCACTGGACTGTATATGAAGCGCATTACTCTCGTCAATTGATCCCACACTTCCCAAATTGCGACTCTTCGTCTTCTTTGCGTTTGCTTTTATCGCGCTAACAGATTCCCTTTTTAATTTTGCCATTTGTATCCAAGGGAAAAATGATGGAGAAAGTTCCTGGGATTGAAGAAGCTGCTGAACCTCCTGTTTCACCCCAATCATCTGCTCATGTGCCAGATAATACAGAAGCAGAACCTCCAGCTTCACCTCAATCATCTGCTGATGTGCCAGATGATATGGAAACAGAACAAATGACTCCTATTAAATATTCTATTATCAGTAGGAATGGAGTTGGGACCATAGGGGAACGCATACCTTTACTTGTGAATCTCTTCAAAGTTGCTATTAATGCTCCACACACGGTTTTTTTCCAGTATAGTGTTTCTATTACTTTTGAAGATAAACAAGCTGTTAAAAGCAAGGGCATTGGGAGAAAAGTAATTGATAGGCTTTACCAAAAATACTCTTCTGAACTTGGTGGCAAAAGGTTTGTATATGATGGAGGGAAAACTTTGTACATGGTGGGTCCTCTATCGCTAGATAAGTATGAATTCAAAGTGTTGCTGGAGGAATCATTTTCAAAACGTACTGCTGAGAGTCCTGGTGCTAATGGAAGCCCTCATGAGGAAACTAAAAGATCAAAACATTCTTTTCAGTCAAAGACATTCATGGTGGAGATAAATTTTGCTACAAAAATACCCCTGCAGTCCATTGCTAATGCCCTCAAAGAGGTTGAGTCAGATGGTCATTCTCAAGATGCTTTGAGAGTGCTTGATACCATACTGAGGCAACGCGCAGCTAACTGTGGCTGTCTCTTGGTAAGGCAATCTTTTTTTCATGATGACTCAAGAAATTTCACCGATGTTGGGGCTGGTGTAATTGCAGCCTCGGGTTTTCATTCCAGTTTTCGTCCCACACAGCAAGGATTGTCACTCAATATGGACGTGTCAACAACTATGATCATAAAACCTGGACCTGTAATTGATTTTCTGTTATCAAACCAACAAGTGAGGGAACCCCGTTATATAGACTGGGATAAGGCAAAAAGAATGCTTAAAAATTTAAGGGTTCAAGCAACTCATCGTAACCAGGAATTTAAAATTTCTGGCTTGAGTGAGAAACCATGCATTCAGCAACTTTTTAGCATGAAGGTGAAAAATGATAACAGCAATAGTGAAGGGCAGACAGTGGATATTACTGTATATGAATATTTTGCCAAACATTGTGGCATAGAGCTGACTTCATCTGCTTATCTTCCATGTCTTGATGTTGGGAAACCCAAACGGGCCATCTATCTTCCCTTGGAGTTATGTTCCCTTGTTTCCCTCCAACGGTATACAATGGCATTATCTCCAATGCAAAGAGCCTTAGTTGAAAAATCATGCCAAAAGCCTCAAGATAGAATGAAAATGCTGAAAAATGCTGTAGGAAATTATTGCTACGATGATGATCCTGTTCTTGCTGCATGTGGCATTTCTATTGAGAAACTATTAACTACAGTTGAAGGTCGTGTTCTTGAGACACCAAAGTTGAAGGTTGGTAAGAATGATGATTGCATCCCCCGTAATGGAAGGTGGAATTTTAATAAGAAGACACTTCTACGACCATCACATGTTGATTATTGGGGTGTTGTCAACTTTTCTGCAAGTTGTGATACTAGTTACTTATCAAGAGAGCTTATCAGATGTGGAATGAGGAAGGGCATTAACATGGAACGGCCATATACTTTGATAGAGGAGGAACCACAGATGAGAAAATATGACCCTGTTGCAAGGGTTGAAAGAATGTTTGACCTGCTTGCTTCAAAACTAAATAGAGAACCAGATTTGATTCTCTGTGTCTTGCCAGAGAAGAAAAATTGTGTTCTATATGGGCCCTGGAAGAAAAAATGCCTGAGTGAAATTGGTGTTGTCACACAGTGTATTTCCCCTGTCAAGATCACTGATCAATACCTTACTAATGTACTTCTTAAAATCAATTCTAAGCTTGGAGGAATAAATTCTCTGTTGGCAATAGAGCAGTCTGGGCATCTTCCCCTGATTAAAGATACCCCAACAATGATTTTGGGGATGGATGTTTCTCACAATTCGCTTGGTCGATTAGATAGTCCATCAATAGCAGCTGTTGTTGGATCTCGATGCTGGCCACTGATTTCAAGGTATAGAGCGTCTGTTAGAATGCAGGCATCTAAGGTGGAGATTATTGATGCTCTATACAAGCCATTGGGAAATGGGGGTGATGATGGTATTATCAGAGAATTGCTTTTAGATTTCTATGATTCAAGTAATGGACGCAAACCAACTCAATTTATTGTCTTCAGGGATGGAGTTAGTGAATCACAATTTAATCAAGTGTTGACTATTGAGCTTAACCAGATAATCAAGGCCTATCAACGTCTTGGTGAGGTTAATGTTCCCAAGTTCACTGTGATTGTGGCACAGAAAAATCATCACACAAGACTGTTTCAGGCTAAGGGTCCAGAAAATGTTCCTCCTGGGACTGTTGTGGACACAACAATCACACATCCAAGAAATTATGATTTTTATATGTGTGCTCATGGAGGGATGATTGGAACATCTAGGCCTGTGCATTATCACGTGCTACTTGACGAGATTGGTTTCTCAGCAGATGGTTTGCAAAATTTGATCCATTCTCTGTCTTATGTGAACCAAAGGAGCACAATTGCAACCTCAGTTGTGGCACCCATAAGCTATGCTCACCATGCTGCAGCTCAAATGGGACAACTTTTGAGTTTTGATGATTTATCAGAAACAGTTTCAAGTCCTGATCCAGAGGGATACACCCCTATTCCACAGCTCCCAAGGTTGCATAAGAATGTGAGGAGTTCCATGTTCTTCTGTTGAAGTGTATCGTGTAGGGTTCTGACAGGTGCTAGTGGGTTTTTAGTTCCTACGAACTGCACCCATCAAATTAGTTTCTCCACCCTACAAACACGTTCCAAAATGTAAAACATGGGTGTAAAAAACAATTTGTTGGGTGTGGAGGAACCAATTTCCTTGCTAGTAAATATGTTTTGATTGACCAAAAGTGTAAATGTACATTTTAGTATATATGCAAACATATGAAGCCCAAATTTTGTTTGATGGGAAGATGGATTTGTGGGCTTGGTTTTAGACAGTCTACATGATAGTGATGTTTTGTCATTTCGAGGCATCAATCATGGTAATTGATCCCTTTTTTTTTCATATTGCTAGC 3357 0.3992 MMEKVPGIEEAAEPPVSPQSSAHVPDNTEAEPPASPQSSADVPDDMETEQMTPIKYSIISRNGVGTIGERIPLLVNLFKVAINAPHTVFFQYSVSITFEDKQAVKSKGIGRKVIDRLYQKYSSELGGKRFVYDGGKTLYMVGPLSLDKYEFKVLLEESFSKRTAESPGANGSPHEETKRSKHSFQSKTFMVEINFATKIPLQSIANALKEVESDGHSQDALRVLDTILRQRAANCGCLLVRQSFFHDDSRNFTDVGAGVIAASGFHSSFRPTQQGLSLNMDVSTTMIIKPGPVIDFLLSNQQVREPRYIDWDKAKRMLKNLRVQATHRNQEFKISGLSEKPCIQQLFSMKVKNDNSNSEGQTVDITVYEYFAKHCGIELTSSAYLPCLDVGKPKRAIYLPLELCSLVSLQRYTMALSPMQRALVEKSCQKPQDRMKMLKNAVGNYCYDDDPVLAACGISIEKLLTTVEGRVLETPKLKVGKNDDCIPRNGRWNFNKKTLLRPSHVDYWGVVNFSASCDTSYLSRELIRCGMRKGINMERPYTLIEEEPQMRKYDPVARVERMFDLLASKLNREPDLILCVLPEKKNCVLYGPWKKKCLSEIGVVTQCISPVKITDQYLTNVLLKINSKLGGINSLLAIEQSGHLPLIKDTPTMILGMDVSHNSLGRLDSPSIAAVVGSRCWPLISRYRASVRMQASKVEIIDALYKPLGNGGDDGIIRELLLDFYDSSNGRKPTQFIVFRDGVSESQFNQVLTIELNQIIKAYQRLGEVNVPKFTVIVAQKNHHTRLFQAKGPENVPPGTVVDTTITHPRNYDFYMCAHGGMIGTSRPVHYHVLLDEIGFSADGLQNLIHSLSYVNQRSTIATSVVAPISYAHHAAAQMGQLLSFDDLSETVSSPDPEGYTPIPQLPRLHKNVRSSMFFC 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04122 920 Pfam Argonaute linker 1 domain 240 289 IPR014811 -
Pste1g04122 920 SMART DUF1785_2 238 290 IPR014811 -
Pste1g04122 920 SUPERFAMILY PAZ domain 285 447 IPR036085 GO:0005515
Pste1g04122 920 MobiDBLite consensus disorder prediction 1 47 - -
Pste1g04122 920 FunFam Protein argonaute 3 644 920 - -
Pste1g04122 920 Pfam PAZ domain 294 422 IPR003100 GO:0005515
Pste1g04122 920 Pfam Piwi domain 576 882 IPR003165 GO:0003676
Pste1g04122 920 Gene3D - 643 920 IPR036397 GO:0003676
Pste1g04122 920 Gene3D - 471 637 - -
Pste1g04122 920 MobiDBLite consensus disorder prediction 20 45 - -
Pste1g04122 920 FunFam Protein argonaute 7 285 412 - -
Pste1g04122 920 SMART Piwi_a_2 576 884 IPR003165 GO:0003676
Pste1g04122 920 Pfam Argonaute linker 2 domain 433 478 IPR032472 -
Pste1g04122 920 ProSiteProfiles Piwi domain profile. 576 884 IPR003165 GO:0003676
Pste1g04122 920 Pfam N-terminal domain of argonaute 70 228 IPR032474 -
Pste1g04122 920 Gene3D paz domain 284 412 - -
Pste1g04122 920 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 49 885 - -
Pste1g04122 920 SMART PAZ_2_a_3 291 425 IPR003100 GO:0005515
Pste1g04122 920 SUPERFAMILY Ribonuclease H-like 560 882 IPR012337 -
Pste1g04122 920 MobiDBLite consensus disorder prediction 163 182 - -
Pste1g04122 920 ProSiteProfiles PAZ domain profile. 315 408 IPR003100 GO:0005515
Pste1g04122 920 CDD Piwi_ago-like 451 878 IPR045246 -
Pste1g04122 920 CDD PAZ_argonaute_like 290 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04122 Pste-Chr1 24511105 24522539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04122 61 920 Eukaryotic Initiation Factors Gene Family AT5G43810 36.515 9.27e-157 484