Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04121 GTGAAAAACAGCACAAAAAAGTGAAAAACTAAACTAGTTAGAAGATATTAAAAGTTAAAACCTTGTAGTTTTGAGCAAGAGAAGTATATGCAGAATACGATACAGCTGAACAAAATGGTTTTCAACTTTCCATTTGAAATTATGATTTTTCAAGCAACAATACTTAAGGAAATTCTGAATTCTGTGGTTGTGAGATGCAGATAATTAGTTTTTTTTTTTATCGAAGTGGGAAAAGGGGTGTTGTGATAGCTTAGGAGAGAATGGATGTGCGTGTTTGTTTTCTGTTAATTTTGCAGAAATAATCAGTTTTTCAGAAATCCTTTAGTGGCTTTTGGAACTATCAATGATGCATAAATTTTGTGCTTGTTTAACTGCAATATGATGCTGATATTTATGCATTGTAGTTTAGCTTAATAGAACTGACGTCATTGGAGTATTGTCAAAATTGTTGGAGCCATAACCATGATATCAGTCATTACTTTTTGTGTGTTTCATCTGATGTAGACTGTGTTCCGATACTTCATCCTCCAGTCATGACTTGTTTCCCATTCTCATTTGGTAAGAAAGTGCGATATGTGGAAAAACATGATCCAGATATTGATGAAGAACTCTCAGGCATTCAAAATGTAAGAATCTTTACCTACAAAGAACTAAGAGCTGCATCTGACAATTTCAGTCCGTCCAACAAAATTGGGCAGGGTGGCTTTGGTTCAGTTTATAAGGGATTACTAAAAGATGGGAGCGTAGCTGCTATAAAAGTTCTTTCTGCAGAGTCAAGTCAAGGGGTGAAGGAATTTATGACAGAGATTAATGTGATCTCAGAAATACAGCATGAAAATTTGGTTAAGCTATATGGTTGTTGTGTGGAAGGGAATCAGCGAATTTTAGTCTACAATTATCTTGAGAACAATAGCCTTGCACAAACACTTCTAGGTTCAGGTCACAGTAATATCTTTTTCAATTGGAAAACACGATCTAAGATTTGCATTGGGATTGCGCGTGGGCTTGCCTATCTTCATGAAGAAGCAAGGCCGCATATTGTTCACAGGGATATAAAAGCAAGCAATATTCTTCTTGACAGAGACCTTACACCCAAGATTTCAGATTTTGGTCTTGCAAAGCTTATCCCATCATACATGACTCATGTCAGCACACGTGTGGCAGGAACAATAGGTTATTTGGCACCAGAGTATGCAATAAGGGGGCAGCTGACACGTAAAGCAGATATTTACAGCTTTGGCGTCCTACTTGTGGAGATAGTTACTGGAAGATGTCACACAAATACACGTTTACCAATAGGAGAACAATTTCTTTTAGAAACGCAAAGAGAACTGGTAGGGCTTGTAGACGTATCGCTAGACGGCCATTTCGATGCCGAGGAGGCTTGCAGATTTCTGAAAGTTGGACTTCTATGCACTCAGGACACGTCGAAGCTCCGGCCACAGATGTCCTTTGTGGTGAAGATGCTCACAGGAGAAATGGATATTGATGAAAGCAAGATAACAAAGCCAGGCATGATTTCAGATTTTATGGACCTTAAAATTAGAGAAGGAAAAGGTGTTGATACTGATACCAAGGCATCATCTTCCTACAATGCATCCTCTGCCTCAGATAGCCAAAGCAATACCATGTCTTATGCTGCAAGTACAAGTACAGCCACAACTTCAACCTTCACTGCAAAATATGATCAAACTTTG 1697 0.383 MTCFPFSFGKKVRYVEKHDPDIDEELSGIQNVRIFTYKELRAASDNFSPSNKIGQGGFGSVYKGLLKDGSVAAIKVLSAESSQGVKEFMTEINVISEIQHENLVKLYGCCVEGNQRILVYNYLENNSLAQTLLGSGHSNIFFNWKTRSKICIGIARGLAYLHEEARPHIVHRDIKASNILLDRDLTPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLVEIVTGRCHTNTRLPIGEQFLLETQRELVGLVDVSLDGHFDAEEACRFLKVGLLCTQDTSKLRPQMSFVVKMLTGEMDIDESKITKPGMISDFMDLKIREGKGVDTDTKASSSYNASSASDSQSNTMSYAASTSTATTSTFTAKYDQTL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04121 388 CDD STKc_IRAK 53 314 - -
Pste1g04121 388 Pfam Protein kinase domain 50 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g04121 388 MobiDBLite consensus disorder prediction 346 364 - -
Pste1g04121 388 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 356 - -
Pste1g04121 388 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Pste1g04121 388 MobiDBLite consensus disorder prediction 343 364 - -
Pste1g04121 388 SUPERFAMILY Protein kinase-like (PK-like) 26 312 IPR011009 -
Pste1g04121 388 FunFam cold-responsive protein kinase 1 17 122 - -
Pste1g04121 388 Gene3D Phosphorylase Kinase; domain 1 17 122 - -
Pste1g04121 388 Gene3D Transferase(Phosphotransferase) domain 1 123 327 - -
Pste1g04121 388 SMART serkin_6 47 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g04121 388 ProSiteProfiles Protein kinase domain profile. 47 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g04121 388 FunFam cold-responsive protein kinase 1 123 328 - -
Pste1g04121 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04121 Pste-Chr1 24495496 24499859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04121 14 366 Receptor kinase-like Gene Family AT1G53430 49.724 6.72e-112 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pste1g04121 Pkinase 3.1e-47 CL0016