Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04113 ATGGCATCATCTCATAGCTTCTCTTTCTTTTCCAATGTCTGAACCTAAAAACTCGAAAATGGAATCATTGAGCGATCTTCCTCCTCTCAAGAGAATACGCTTCATGGAAAAACAGCAACAATCGTTCTTATCTTTGCCAACGAAAAAACGAAAGGAGTCGCGCACCCAATCGCCACCCTCTCCGAAAGCCGTTTCCAACTTGTACCTGCCTGCGAAGAAGAGAGTGTGGGCCCCACAGCCCGAGACTCCGCCGCCTTCAAACGACGCCGTTTCCTCCTCGTTTGACCTCAACGCTCATCCGGCGGAGTGTGACGATGATGATGATGGGATTTTATGCTGTGTGTGCCAGAGCACCGATGGCGACCCTGCGGACCCCATCGTTTTCTGCGACGGATGCGATCTTATGGTTCACGCTTCTTGCTACGGTGCGCCGCTCTCCAACTCCGTTCCCGACGGAGACTGGTTCTGCCAACGCTGCATTTGCGCAAAAGCAGTTGACAACACATTCGGCTCCCACCCAAAGAGGACCACGGATGGTGCATTGGCTCATGTGGTGTGCGCATTGTTCGTACCAGAAGTCTTCTTCATTGACCCTGAAGGGAGGGAGGGGATAGACTGCTCCAAGGTTCCCAAGAAGAGGTGGACAGAGAAGTGCTATGTTTGTGGGAGTTGTGATGGGTGTGCTTTGGTGTGTTCTGAGCCTAAGTGTGGACTAGGGTTTCATGTCACATGCGCTTTGAAAGAGGAGCTTTGGATTGAGTACAAGGAAGGCAAGAAAGGGGGAACTATTGTTGCTGGATTTTGCAAAAAACACACTCAAATATGGGAAAAGCAACAGCAATCCGGGAAGTATAAAATTGTTGCAGAAGATGAAAAACCCCAAGACTTTCGGATGGATGGTATTGTGCTATCAAGCATCAATCTCACAAGTGTGAACCTACATACAAACTCGAGAATGAAATCTCCCTTAAGAGTGATGCAAAAAGAGGAGTTGGAATCCAAAAAACGAAAAGAACCATGCGAAACATTTCTATCTTCACATTTGCCCACAAAAAAACGAAAGGAGTCACGTATCCAATTCCCACCCTCACCCAAAACCAAAACCAAAACCGCATTCAACTTATGCCTCCCTGTCAAGAAAAGAGTGTGGGCCCCACCCTTAGACGACGTCGTTCCACAAGAGTATGGGATTCTATGCTGTGTGTGCAAGAGCATCGGTGACCACCCTGCGAACCCCATTCTTTCCTGCCGTGGCTGTGATCTCACCGTTCATGCTTTCTGCTACGGTGTGCCACTTTGCAATTCTGTTCCCGACCGAGACTGGTTCTGCCAACGCTGCATTTCCGCAAAAACATTCACGTCCAACCCAAAGGTT 1375 0.4887 MSEPKNSKMESLSDLPPLKRIRFMEKQQQSFLSLPTKKRKESRTQSPPSPKAVSNLYLPAKKRVWAPQPETPPPSNDAVSSSFDLNAHPAECDDDDDGILCCVCQSTDGDPADPIVFCDGCDLMVHASCYGAPLSNSVPDGDWFCQRCICAKAVDNTFGSHPKRTTDGALAHVVCALFVPEVFFIDPEGREGIDCSKVPKKRWTEKCYVCGSCDGCALVCSEPKCGLGFHVTCALKEELWIEYKEGKKGGTIVAGFCKKHTQIWEKQQQSGKYKIVAEDEKPQDFRMDGIVLSSINLTSVNLHTNSRMKSPLRVMQKEELESKKRKEPCETFLSSHLPTKKRKESRIQFPPSPKTKTKTAFNLCLPVKKRVWAPPLDDVVPQEYGILCCVCKSIGDHPANPILSCRGCDLTVHAFCYGVPLCNSVPDRDWFCQRCISAKTFTSNPKV 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04113 447 CDD ePHD 148 260 - -
Pste1g04113 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 381 440 IPR013083 -
Pste1g04113 447 CDD PHD_BRPF_JADE_like 100 148 - -
Pste1g04113 447 ProSitePatterns Zinc finger PHD-type signature. 388 435 IPR019786 -
Pste1g04113 447 ProSiteProfiles Zinc finger PHD-type profile. 385 438 IPR019787 -
Pste1g04113 447 ProSiteProfiles Extended PHD (ePHD) domain profile. 144 261 IPR034732 -
Pste1g04113 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 141 IPR013083 -
Pste1g04113 447 PANTHER PHD FINGER PROTEINS 386 435 - -
Pste1g04113 447 SMART PHD_3 206 261 IPR001965 -
Pste1g04113 447 SMART PHD_3 387 436 IPR001965 -
Pste1g04113 447 SMART PHD_3 100 149 IPR001965 -
Pste1g04113 447 Pfam PHD-zinc-finger like domain 159 260 - -
Pste1g04113 447 Pfam PHD-finger 113 149 - -
Pste1g04113 447 Pfam PHD-finger 400 436 - -
Pste1g04113 447 SUPERFAMILY FYVE/PHD zinc finger 386 439 IPR011011 -
Pste1g04113 447 SUPERFAMILY FYVE/PHD zinc finger 93 152 IPR011011 -
Pste1g04113 447 ProSitePatterns Zinc finger PHD-type signature. 101 148 IPR019786 -
Pste1g04113 447 MobiDBLite consensus disorder prediction 1 57 - -
Pste1g04113 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 263 IPR013083 -
Pste1g04113 447 ProSiteProfiles Zinc finger PHD-type profile. 98 151 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04113 Pste-Chr1 24392775 24402349 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04113 377 440 C2H2 Transcription Factor Family AT3G14740 53.125 1.24e-16 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pste1g04113 zf-HC5HC2H_2 1.1e-19 CL0390