Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04027 TAATAATCTCTCTGCAAAAGCATTGATTTTTTTTAGGGTTTTTAAAATTAAAAAAGAAAAGAAAAAATAGTCTCAGTTATTAAACTTTCTCTCTTACCCATTGGGACTTTCTCTTCTGTTCTCTCTCTTCTCTGCGTTTAATAGCTGTACTTGCTTCTTCTCCCTTTATCCTCTTCCCTCATCATTCTTCAATTTCTCACCCAAATTTCGCTACTTTCGCTGCGATCGTAGTTGATTTCACGCGCGTTCTTGCGTGGGGTGGATTGTTTGGTTGATTTCGTGTTTGAGAAAGACCGCGTGACTTTGATGATAACGAGGATTAAATTGCATCAGCAACTCTTTATGATATGGATCAAATGAGTCAACAAAGGCATGGCTATTTTCATTCTGAAAGTATCCATTTCGGAGGCACCAACATCTCTCAGCCTAATATCTGCACAGTGGTGACAGCTTCAGGAAACGGAACTAATTTAGATTCCCATTATTTACTAGATGCTTATGACAATGGTATGGTCTATGGAGTGACACAATACAATGGAGTTCAGCATCAACATAATCTTGAAATGGGTGTTCCAGCTGCTGCTAATGTATATTATTCTAGCATGAATCCTTCATCTGGTACATCTGCATCTCTAAATACTGAAGTAATGAGAGGAAATTATCAATATTTTAATGCCTCAGCTAGTTCTTCAGTTGCTCCACATAATGCAAGACACACTGAAAATGGGATCCCCTCACTACCACATTGTAGTTCATGGAACAGATCAGGGGAGTCTATGATGGTGCGTGACCCTAACCGTTTGATTCGAGGAAACTATTTAAGCCAGCACTTTCAACCAGCTGCTCCTCCCTGGCTGGACCAACAGTTGAATAGCAATAATAATGATGGACATGCTTTGGCTTGGCATCAGTCTCTTCCAATGCCATACATACAAGCTCCCAGTGCTAATGGAAGTTCATTAGAGAACCCAAGAATGGGTCCACAGAGATACCATGATACTTCTGGCAGCAGAAGTGGCCACAGATATCCCCATCCTTCTCTTGTCAACCCACAGTACCATAACTTTCATCATCAAACGCAGCCTGTGCAAGAAATGAGAGGTCACTCTGTCAACTTTCATCCTTCAGTAAATGCACCTTCATATAGAGTTCCAACAAATCCTTCACGCAGTTCTTCAGTCTTCATTCAAGATGCTATTGAGATGGGAGCTAGGCATGTTGGTCCTGCACCATTTTCAGGTTCACGTATATACCGACCTCATAGAGGCAGCATGCATGAGACTACTCTTAGACATCGAAATCTTCCTCCTGTGGCCTTTCTCCAAGTTGATGATGTTACTTTACTGGTTGACCATCATAGTGATATGCGTTTGGACATTGAGGATATGTCTTATGAGGCAAGTACACATTGTGATTTTGAGCTTCTTGCATTGGGTGAGCGGATTGGCAAAGTAAACACAGGCTTGTCAGAGGAAATGATAACAGGTCAAATGAAGACAAAAACTTATTTACTACATACTAATGCTATTAACTTGGAGGAGGAAGCAGCTGCCGAGGAACAGGAAGCCGATTCTTGCATAATATGCCAGGATGAATATAAGAACCAAGAGAGGATTGGAATTCTACAGTGTGGGCATGAATATCATGCAGATTGTTTAAAGAAATGGTTACTTGTGAAAAATGTCTGCCCCATATGTAAATCAGAAGCATTGTCTCCTGAGAAGTGTGTATAAAAAACAATGAGAGTGACATGTCTCTCAGTTTCTACATGCACACTTAGTTATTACATTTTTCTAACGGATTCATATTTTGTTATGTATATGAACTCGTACATATAGACAGTCGCATTGCCCAACTCATTTATTTGTTGGCGCCCGAAGAACATGTATGTATCAAGTTGTACAGACTTCTGTTGATATATTAATTTTAGGCAAT 1935 0.4 MDQMSQQRHGYFHSESIHFGGTNISQPNICTVVTASGNGTNLDSHYLLDAYDNGMVYGVTQYNGVQHQHNLEMGVPAAANVYYSSMNPSSGTSASLNTEVMRGNYQYFNASASSSVAPHNARHTENGIPSLPHCSSWNRSGESMMVRDPNRLIRGNYLSQHFQPAAPPWLDQQLNSNNNDGHALAWHQSLPMPYIQAPSANGSSLENPRMGPQRYHDTSGSRSGHRYPHPSLVNPQYHNFHHQTQPVQEMRGHSVNFHPSVNAPSYRVPTNPSRSSSVFIQDAIEMGARHVGPAPFSGSRIYRPHRGSMHETTLRHRNLPPVAFLQVDDVTLLVDHHSDMRLDIEDMSYEASTHCDFELLALGERIGKVNTGLSEEMITGQMKTKTYLLHTNAINLEEEAAAEEQEADSCIICQDEYKNQERIGILQCGHEYHADCLKKWLLVKNVCPICKSEALSPEKCV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04027 461 MobiDBLite consensus disorder prediction 198 218 - -
Pste1g04027 461 CDD RING-H2_RNF24-like 408 454 - -
Pste1g04027 461 ProSiteProfiles Zinc finger RING-type profile. 410 451 IPR001841 -
Pste1g04027 461 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 102 456 IPR045191 GO:0061630
Pste1g04027 461 SMART ring_2 410 450 IPR001841 -
Pste1g04027 461 FunFam E3 ubiquitin ligase BIG BROTHER 369 455 - -
Pste1g04027 461 MobiDBLite consensus disorder prediction 198 225 - -
Pste1g04027 461 SUPERFAMILY RING/U-box 409 455 - -
Pste1g04027 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 455 IPR013083 -
Pste1g04027 461 Pfam Ring finger domain 408 451 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04027 Pste-Chr1 22294782 22302564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04027 330 455 C3H Transcription Factor Family AT2G15530 48.413 1.27e-32 129