Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04019 TTCTAATCAATTTCCTTCTTTGAAAGAGATTGCACCCTCTTCTCTGTTTTTCCTTGTGCTTTTCTTCTTCTGGTGCATGCTCTTATGGATAGCTTTTACCATCATCATCATCTTCATCCTCACTTTGACAACAACAACAACAACAACAGTGAACCACATTTACCTCCTGGCTTCAGATTCCACCCCACAGATGAAGAACTCATCACATACTACCTCCTCAAGAAGGTTCTAGACAGCTCTTTCACTGGCCGAGCCATAGTTGAAGTCGACCTCAACAAGTGCGAGCCATGGGAACTTCCTGAGAAAGCAAAGATGGGAGAGAAGGAATGGTACTTCTATAGCCTTAGAGATCGAAAGTACCCAACTGGGTTACGCACCAATAGAGCCACTGAAGCTGGTTATTGGAAAGCCACAGGCAAAGACAGAGAGATCTACAGCTCCAAAACTTGTTCACTGGTTGGCATGAAGAAAACCTTGGTTTTCTATAGAGGAAGGGCTCCAAAGGGTGAAAAGAGCAACTGGGTCATGCACGAGTATCGCTTAGAAGGCAAATTCGCTTATCACTATCTCTCTAGAAGCTCCAAGGATGAGTGGGTGATCTCACGTGTGTTTCAGAAGAACGCCACCGGCGGTGGTTCCACCGTGTCGGCCACCACCACCAACACCGGTTCTAAGAAGACAAGAATAAGCACATCAAACACTAGCAGCAACATGAGCCTGTGCCCTGAACCGGGTTCACCTTCTTCCATATACCTCCCACCGCTTCTAGAATCTTCTCCTTATACCGCCGCCAGCGCCGCCGCAACATTCAACGACCGTGAAAGCTGCTCCTTCGATAGCGCCGCCGCCGCCAACAACAACAACAACAATCAAAGGGAGCACGTGTCCTGTTTCTCCACCATGTCCGCCGCCGCCGCATTCGACCACCTCGTACCGCCGCCGGAGCCGCCACTGGACCCTCTCTCTCGCTTTCATCGCAACAACAACGTTGGTGTCGGAGTCTCTAACTTCCCGTGTTTGAGATCATTGCACGACAACCTTAACCTACCGTTCTTTTTTCCTCAGACTGGACACGTCAGCACCTCTGACGTGGCATCTTTCGGCAATTTCGGAAACTGGCCGGCGCCGGAGGATCCGGCTCCGGTGCAGAGGGTGGTTGACGGCGGCTCCGGCATGGCGATTGTACCCTCCGAGTTGGACTGCATGTGGGGCTATTGATTTTCTCTTTAC 1230 0.5065 MDSFYHHHHLHPHFDNNNNNNSEPHLPPGFRFHPTDEELITYYLLKKVLDSSFTGRAIVEVDLNKCEPWELPEKAKMGEKEWYFYSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKNATGGGSTVSATTTNTGSKKTRISTSNTSSNMSLCPEPGSPSSIYLPPLLESSPYTAASAAATFNDRESCSFDSAAAANNNNNNQREHVSCFSTMSAAAAFDHLVPPPEPPLDPLSRFHRNNNVGVGVSNFPCLRSLHDNLNLPFFFPQTGHVSTSDVASFGNFGNWPAPEDPAPVQRVVDGGSGMAIVPSELDCMWGY 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04019 377 SUPERFAMILY NAC domain 14 178 IPR036093 GO:0003677|GO:0006355
Pste1g04019 377 ProSiteProfiles NAC domain profile. 26 178 IPR003441 GO:0003677|GO:0006355
Pste1g04019 377 Gene3D NAC domain 35 182 IPR036093 GO:0003677|GO:0006355
Pste1g04019 377 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 25 252 - -
Pste1g04019 377 FunFam NAC domain-containing protein 100-like 35 182 - -
Pste1g04019 377 Pfam No apical meristem (NAM) protein 27 153 IPR003441 GO:0003677|GO:0006355
Pste1g04019 377 MobiDBLite consensus disorder prediction 182 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04019 Pste-Chr1 22129467 22131745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04019 13 377 NAC Transcription Factor Family AT5G53950 50.773 4.84e-111 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste1g04019 NAM 4.1e-40 No_clan