Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04007 AAAGCACACAATTAACAAAATGGAGCTGTGGTCCACACCCTTTGCACCTCCTTTTCTGCCTTTCTGCTTCATATAAACTCCCTCTTTCACTTCATTGCTCCAAAAAGTCTAGGCTCAAAACCAAACTTACTTGCTTCTCCATTACCTTTTTCATCATTGTAAGCATCATCATTCACCACCCTTTTGCACAATGGAGGCCAGGAGTGTGGAGAGGAAGAGAACAGTGGTTGAGAGGGTGAGAAAGAATAGCACAGTGGAAGAGGAAGTGGAAAATGAAGTGGAGGAGGAGGATGAAAGTGGTGTTAGTCATGCAGAAGAAGAGAAGAAGAAAGGGGTTAGTAGTACTAGTAACAGTGGTGGGAGAAGAGGGTCAAGTGGGGGTGGCGGAGGGGTTTCTCCACCTTCATGTCAAGCAGAGAGGTGTGGTGCTGATTTGACTGATGCAAAAAGGTACCATCGACGCCACAAGGTGTGTGAATTTCATTCCAAGGCACCTATTGTGGTGGTTGCAGGGCTCAGGCAGAGGTTTTGCCAGCAATGTAGTAGGTTCCATGACCTGGCTGAGTTTGATGAATCCAAGAGAAGCTGCCGCAGACGGTTGGCCGGTCACAACGAAAGGCGCCGGAAAACCAACCCAGAAGCTGGCAATGAGGGCAGCAGCAACAGCAGCAAAGGCCATCACCCTAAGGAAACAACACACTGCAGGCTTGCTGATGAGAGGGGGAGAATTCAAATGAACCTACCAGGGAGTTCTGGCTATAAGTCTTTCAATATCAGATAAAGCCAAAGTGTTCACCAAGCTCTCTCTCTTCTGTCACCCTCTGGTTTCTTACAAGCCAAGGCATATAATAAAGACCACTTTGTATGTTCACATGAACAAGAACCAAACTCATAAAACTTCCAACATCCAAAGCTGGTGTCTTATGCAACGTAAGCTAGTTTTCATGAGCTCTATATTTTCTTATTCAGAGAGTGCCTCTTGTTTCTGTTTGTGTTACCATTGTAATCCTATTAAAGCACTCTTCCATGGTGTGCTCTTATCTTTCATTGGATTAGAATAAAAAGCTATTGCTGCTTTTGGGTATTCA 1088 0.4504 MEARSVERKRTVVERVRKNSTVEEEVENEVEEEDESGVSHAEEEKKKGVSSTSNSGGRRGSSGGGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPIVVVAGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKTNPEAGNEGSSNSSKGHHPKETTHCRLADERGRIQMNLPGSSGYKSFNIR 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04007 196 FunFam Squamosa promoter-binding-like protein 14 65 134 - -
Pste1g04007 196 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 45 160 IPR044817 GO:0003677
Pste1g04007 196 MobiDBLite consensus disorder prediction 137 196 - -
Pste1g04007 196 MobiDBLite consensus disorder prediction 1 74 - -
Pste1g04007 196 ProSiteProfiles Zinc finger SBP-type profile. 70 147 IPR004333 GO:0003677
Pste1g04007 196 Gene3D - 63 134 IPR036893 GO:0003677|GO:0005634
Pste1g04007 196 MobiDBLite consensus disorder prediction 160 177 - -
Pste1g04007 196 Pfam SBP domain 73 146 IPR004333 GO:0003677
Pste1g04007 196 SUPERFAMILY SBT domain 71 151 IPR036893 GO:0003677|GO:0005634
Pste1g04007 196 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04007 Pste-Chr1 21878927 21880651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04007 57 151 SBP-box Gene Family AT1G53160 68.421 3.72e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pste1g04007 SBP 1.5e-31 No_clan