Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04003 GGAAAAGGTTTAGGTGGGTCGCGAGAGTATGCTGATGTTTCGTTTGGAATGGTCACTGTTGAGTGATAGAGTTGAGTTACCTGCATTTTTAATGTATTTGGTTTTGGTGTGTGTTGGTGATATCAATAGTTTTCACTCTGTTGTTTGTCTTTATCTGAACACATATATATTATCTCTTTTGGTTTCTGAAATGGTGCTGCAAATATGTCACCCTATGGCTTTTGTGCAATGGTGTTTCTTGGCTTGCTTTCTTTGCTTTTCTGTGGGACTTGAAACCCCTGCCAGATCCTGTCACAAGCATGATTTGTTGGCCCTGAAGGAATTTGCAGGCAACCTTACAAAAGGGTCTATCATCTCAGAATGGTCCAAAGATGATGTCTGCTGCAATTGGATTGGAGTTACTTGTGATGATGTGGTTGATGGAGCAGCTGATAGTAGAGTGTCCAAGTTGATTCTACCTGGGTTGGGTCTCAATGGCTCAATTTCGAGCTCTTTAGCCTCTCTACATAAGCTAAAGATGCTCAATCTTTCGTTCAATCATCTCCAAGGTGGATTGCCTTCTGAACTCTCCAAGTTGAAGCAGTTAGAAGTTCTTGACTTGAGCCATAACTTGCTGTCAGGACAAGTTGGTGGGGCAATTCCGGGTTTGCAATCCATTCAGATACTGAATATTTCTAGCAATTTATTTGTTGGAGACCTCTTCCATTTTGGGGCGTTACAAAATCTCCTTGCTCTCAACATAAGCAACAATTCATTTACTGGCCAGTTAAATTCTCAAATTTGCAGCTTCTCCCAGGGTCTTCATATCCTTGATATATCCAAAAATAATATTTCTGGTGATCTTGAACGGTTGGGCAACTGTAGTACATCTCTGCAAGAGTTACATTTGGATTCCAATTTATTTTCTGGTCCTCTTCCTGATTCTTTGTATTCAATATCATCCTTGGAGCAGCTCTCAGTCTCTCTGAACAACCTCTCTGGTCAGTTAAGCAAGGACCTAAGTAACCTCTCAAGCCTAAAATCTCTAATAATTTCTGGAAATCATTTTTCAGGGGAACTACCAAATGTTTTTGGGAATCTTTTGAACCTTGAACAACTAATAGGAAACTCCAATTCATTTTCTGGATCATTGCCTTCCACCTTGGCCTTATGCTCCAAACTCCGAGTGCTTGATCTTCGAAATAATTCTTTGACAGGTTCTGTTGGTCTTGATTTTACTGGCTTGTCTAATCTTTTCACTTTAGACCTTGCTAGCAATCATTTCAAAGGATCCCTTCCAAATTCCTTGTCCTATTGCCATCAATTGACAATGTTGAGCGTTGCTAAAAATGAATTAAGTGGCCAAATCCCTGAGAGCTATGCAAACCTCACTTCACTTTTGACCTTGTCTCTGTCAAACAATAGCTTTGAGAACTTAGCTGGAGCGCTTAATGTACTGCAGCAGTGCAAAAATGTCACCACTCTTATCCTCACAAAGAATTTCCATGGTGAGGAAATTCCAGAAATTTTAACAGCAAGCTTCAAGAGCCTTGTGGTTTTAGCCCTTGGAAATTGTGGTCTCAAAGGCCGTATTCCTTCTTGGCTATTGAATTGTGAGAAATTGGAAGTTCTTGATTTGTCGTGGAACCATTTGGAAGGTAGTGTCCCTTTATGGATTGGTGGGATGGAACATTTATTCTACTTAGATTTGTCAAATAATTCTCTTACAGGAGAAATACCAAAAGGTTTGACAGAGTTGAAGGGCCTCATATCCTCAAATTATCATATATCGAGTCTTTTTGCATCTGCTGCTATTCCTCTCTATGTCAAGAGAAACAAGAGTGCTAATGGGCTGCAGTATAACCATGCCTCAAGTTTCCCTCCTTCAATATACTTGAGCAATAACAGATTAAGTGGAACAATATGGCCTGAAATTGGTTGTCTAAAAGAACTGCATATCTTAGATTTAAGCAGGAACAATATCACTGGCATCATTCCTAGCTCTATTTCAGAGATGAAGAATTTGGAAACATTAGATTTATCTAATAATAGTCTCTATGGAACTATTCCTCCATCATTTAACAGCCTCACATTCTTGTCAAAGTTCAGTGTGGCATATAACCATTTATGGGGGCCAATTCCAACCGGAGGACAATTTTCAAGTTTCCCAAATTCTAGTTTTGATGGCAATGTAGGGCTTTGTGGGGAAACATATTATCATTGTATGAATGCAAAAAGTGTGGTAATTGATGCTCATTCTGTGGGAAAATTGGGTAAAAACAGTGTCCTTGGCATAACAATTGGTTTAGGAGTAGGCCTTGCACTGCTTCTTGCAGTTATTCTGACAAGAATGTCAAAGAGGGATGAGGATAAGCCAGTTGACAACTTCGATGAGGAGCTTAGCTGGTCAAACAGGATGCCTGAAGCACTTGCTTCTTCAAAATTGGTGCTTTTTCAGAATTCAGATTGCAAGGATCTCACTGTTGAAGATTTATTGCAATCCACTAGCAATTTTAGCGAAGAAAATATAATTGGCTGTGGAGGGTTTGGTCTTGTTTACAAGGCTAATCTTCCAAATGGCACAAGGGTAGCTATCAAGAAACTTTCAGGGTACTGTGGTCAGGTGGAACGTGAATTCCAAGCTGAAGTAGAGGCCCTCTCAAAAGCTCAGCATAAGAACCTTGTCTCTCTTAAAGGTTATTGTCAGCATGTCAATGACAGATTGTTAATTTACACCTACTTGGAAAATGGAAGCCTTGATTATTGGCTTCATGAGATTGAGGATGGAAATTCAGCTCTAAAATGGGATGTGAGACTCAAGATTGCCAGAGGTGCAGCTCACGGATTAGCTTATTTGCATAAAGAGTGTGAACCACATATTGTGCATCGAGATATTAAATCCAGCAACATACTTTTGGATGATAAATTTGAAGCTTATTTGGCTGACTTCGGTCTCTCAAGGCTACTTCAACCCTATGATACCCATGTTTCAACAGATTTAGTAGGAACTTTAGGATATATTCCTCCAGAATATAGTCAGGTACTGAAAGCAACTTTCAAGGGTGATATTTATAGCTTTGGTGTTGTTCTTGTTGAGCTTCTTACCAGTAGAAGGCCTGTAGAAGTCATCATAGGGCAACGAAGCCGGAATCTAGTGTCTTGGGTGTTTCAGATGAAATCTGAGAATAGGGAGCAGGAAATTTTTGATTCTGTCATTTGGCACAAGGATAATGAGAAGCAGCTCTTAGAGGTACTAGCAATTGCTTTTAAATGTATAGATGAAGATCCAAGGCAGAGACCTCATATTGAATTAGTTGTTTCATGGCTTGATAGTGTAGGATTTGAAGGCTCTGAACAGTCATCATCTTAA 3349 0.3962 MLMFRLEWSLLSDRVELPAFLMYLVLVCVGDINSFHSVVCLYLNTYILSLLVSEMVLQICHPMAFVQWCFLACFLCFSVGLETPARSCHKHDLLALKEFAGNLTKGSIISEWSKDDVCCNWIGVTCDDVVDGAADSRVSKLILPGLGLNGSISSSLASLHKLKMLNLSFNHLQGGLPSELSKLKQLEVLDLSHNLLSGQVGGAIPGLQSIQILNISSNLFVGDLFHFGALQNLLALNISNNSFTGQLNSQICSFSQGLHILDISKNNISGDLERLGNCSTSLQELHLDSNLFSGPLPDSLYSISSLEQLSVSLNNLSGQLSKDLSNLSSLKSLIISGNHFSGELPNVFGNLLNLEQLIGNSNSFSGSLPSTLALCSKLRVLDLRNNSLTGSVGLDFTGLSNLFTLDLASNHFKGSLPNSLSYCHQLTMLSVAKNELSGQIPESYANLTSLLTLSLSNNSFENLAGALNVLQQCKNVTTLILTKNFHGEEIPEILTASFKSLVVLALGNCGLKGRIPSWLLNCEKLEVLDLSWNHLEGSVPLWIGGMEHLFYLDLSNNSLTGEIPKGLTELKGLISSNYHISSLFASAAIPLYVKRNKSANGLQYNHASSFPPSIYLSNNRLSGTIWPEIGCLKELHILDLSRNNITGIIPSSISEMKNLETLDLSNNSLYGTIPPSFNSLTFLSKFSVAYNHLWGPIPTGGQFSSFPNSSFDGNVGLCGETYYHCMNAKSVVIDAHSVGKLGKNSVLGITIGLGVGLALLLAVILTRMSKRDEDKPVDNFDEELSWSNRMPEALASSKLVLFQNSDCKDLTVEDLLQSTSNFSEENIIGCGGFGLVYKANLPNGTRVAIKKLSGYCGQVEREFQAEVEALSKAQHKNLVSLKGYCQHVNDRLLIYTYLENGSLDYWLHEIEDGNSALKWDVRLKIARGAAHGLAYLHKECEPHIVHRDIKSSNILLDDKFEAYLADFGLSRLLQPYDTHVSTDLVGTLGYIPPEYSQVLKATFKGDIYSFGVVLVELLTSRRPVEVIIGQRSRNLVSWVFQMKSENREQEIFDSVIWHKDNEKQLLEVLAIAFKCIDEDPRQRPHIELVVSWLDSVGFEGSEQSSS 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04003 1106 PRINTS Leucine-rich repeat signature 656 669 - -
Pste1g04003 1106 PRINTS Leucine-rich repeat signature 549 562 - -
Pste1g04003 1106 Pfam Leucine rich repeat 161 219 IPR001611 GO:0005515
Pste1g04003 1106 Pfam Leucine rich repeat 500 559 IPR001611 GO:0005515
Pste1g04003 1106 Pfam Leucine rich repeat 634 693 IPR001611 GO:0005515
Pste1g04003 1106 Pfam Leucine rich repeat 377 436 IPR001611 GO:0005515
Pste1g04003 1106 SUPERFAMILY Protein kinase-like (PK-like) 804 1093 IPR011009 -
Pste1g04003 1106 Gene3D Phosphorylase Kinase; domain 1 784 897 - -
Pste1g04003 1106 Gene3D Transferase(Phosphotransferase) domain 1 898 1100 - -
Pste1g04003 1106 SUPERFAMILY RNI-like 117 345 - -
Pste1g04003 1106 Gene3D Ribonuclease Inhibitor 89 206 IPR032675 -
Pste1g04003 1106 Pfam Leucine rich repeat N-terminal domain 90 127 IPR013210 -
Pste1g04003 1106 ProSiteProfiles Leucine-rich repeat profile. 658 680 IPR001611 GO:0005515
Pste1g04003 1106 SUPERFAMILY RNI-like 279 577 - -
Pste1g04003 1106 ProSitePatterns Protein kinases ATP-binding region signature. 828 851 IPR017441 GO:0005524
Pste1g04003 1106 SMART LRR_typ_2 327 350 IPR003591 -
Pste1g04003 1106 SMART LRR_typ_2 656 679 IPR003591 -
Pste1g04003 1106 SMART LRR_typ_2 159 182 IPR003591 -
Pste1g04003 1106 SMART LRR_typ_2 399 423 IPR003591 -
Pste1g04003 1106 SMART LRR_typ_2 183 206 IPR003591 -
Pste1g04003 1106 SMART LRR_typ_2 546 570 IPR003591 -
Pste1g04003 1106 SMART LRR_typ_2 447 469 IPR003591 -
Pste1g04003 1106 SMART LRR_typ_2 632 655 IPR003591 -
Pste1g04003 1106 FunFam Leucine-rich repeat receptor protein kinase MSP1 787 897 - -
Pste1g04003 1106 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 258 392 - -
Pste1g04003 1106 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 132 358 - -
Pste1g04003 1106 ProSiteProfiles Leucine-rich repeat profile. 634 655 IPR001611 GO:0005515
Pste1g04003 1106 SMART LRR_sd22_2 656 682 - -
Pste1g04003 1106 SMART LRR_sd22_2 632 655 - -
Pste1g04003 1106 SMART LRR_sd22_2 183 209 - -
Pste1g04003 1106 SMART LRR_sd22_2 375 396 - -
Pste1g04003 1106 SMART LRR_sd22_2 447 465 - -
Pste1g04003 1106 FunFam Tyrosine-sulfated glycopeptide receptor 1 396 730 - -
Pste1g04003 1106 FunFam Leucine-rich repeat receptor-like protein kinase 898 1104 - -
Pste1g04003 1106 Gene3D Ribonuclease Inhibitor 319 418 IPR032675 -
Pste1g04003 1106 SUPERFAMILY L domain-like 602 718 - -
Pste1g04003 1106 Pfam Protein kinase domain 823 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g04003 1106 ProSitePatterns Serine/Threonine protein kinases active-site signature. 944 956 IPR008271 GO:0004672|GO:0006468
Pste1g04003 1106 ProSiteProfiles Protein kinase domain profile. 822 1093 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g04003 1106 Gene3D Ribonuclease Inhibitor 423 732 IPR032675 -
Pste1g04003 1106 Gene3D Ribonuclease Inhibitor 224 318 IPR032675 -
Pste1g04003 1106 SMART serkin_6 822 1093 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04003 Pste-Chr1 21799120 21802805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04003 93 1105 Receptor kinase-like Gene Family AT1G55610 34.964 4.32e-168 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Pste1g04003 Pkinase 7.9e-42 CL0016