Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03983 ATGGGTGATGTTAGCTTGAGGCTATGGTTGGATAAATTTGAACGATTAGTGAATGTCTTTGAATGCTTGCACATATTTAGGCAAATAGCAGAACTTGTTCATGTGGCTCATTCTCAAGGAATTGTTGTTTATAATGTGAGGCCTTCCTACTTTGTGATGTCATCTTTCAACTATGTCTCATTCATTGAGTCAGTAATTTGTTCAAATGCTGGCTCAAAAACTTTAGAAGAAATTGTTGAGACCAAAACTCCAACACCTACACCTAATCATGATATGCACCAACAAATATGTTTAGGAGGTGAAGATTTTGTACCTATCAAGAATTCAACAGGTATGTTAGACTCTAGTTGCATGTTGTCAAGTGTGGTGTTTTCGAAACTTGCATCATCAATAGGTGACACAGAAGAACATAAAATGAAAAACAAGAGAAAGGTTGAGGAAGTTACAGAAAAGAAGCAACCATTTCCAACAAAACAGGTACTGCAAATGGAGGTGAGTTGGTATACTAGTCCTGAAGAGGTAGCTGGTGCCACAAGTTCCCTTGCTTCAGATGTTTACCGGTTGGGAGTTCTCCTTTTTGAGCTATTTTGTCCACTCAACTCAAGAGAAGAAAAGGACATAACCATGTCCAACCTAAGACAGAGAGTTTTTCCTCCTCAGTTACTTCTAAAGTGGCCTAAAGAAGCTTCATTTTGCTTATTGTTATTACATCCTGAGCCCAACAGTCGTCCAACAATAGTGGAATTATTGGAGAGTGAGTTTCTTAATGAACCAAGAGATGATATGGAAAAGGGTGAAGCGGCAGTAGAACTTAGAGAAAAGATAGATGATCAAGAGTTGTTGCTTGAATTCCTTTCATTAATTCAACAGAAAAAAAGGGAAGCTACTGAGAAGTTGCAACATACTATCTCTTTTTTGTGTTCAGATATTGAACAAGTGATGAAGCAAAAAGTTGTTTTTAAAGAGATAGTAGGCAGTGGACTAGGGAGTAATGATTGTTCAACATCAGGTTTCCCATCATTTAAAATTGTTGATAATGATATGGATTCTACTAGTCTAGGAACCAGGAAACGAGTCAGACTTGATTTGTGTGTTGATGACACTAAAGGATTTAATAGTAACACAGATGATGTTCAGGAAAGTGATGAAACTATTCTTTCAAAAAGTCCACGGGTTTTAAAGTACTTGAAAAAACTAGAGTCATCATACTTTTTGGCACGAGGCAAATCATCCTATTCCTCAAGGGAACTTGTGGTTCAACAATCACCTATAACTATTGATGATGGACAGTCTAATGTTATGACTGAAAAAAGTTGTTTCAATAAAGTAGCATTAACAGAGCAATTAAAGGGGACAAAAAGTCATTGGAAAAATCCTTTTATTGAGAATTTGTGCAAGTACTTATCCTTCAGTAAGTTAGAGGTTAAGGCTAATTTGAAACAAGGGGATCTTTTGCAATCTTCCAACCTGGTGTGCTCACTTAGCTTTGATCGCGATGCAGATTTTTTTGCTATTGCAGGAATAAATAAGAAGCTTAAAGTATTTGAATATGACACAACCATAAATAAAAATCGTGATATCCACTATCCAATAGTGGAGATGTTATGGGATGTGACAAGAGGTCAAGTTCAATGTGAAATGAGGGAGCATGAGAAAAGGATATGGTCCATTGATTTCTCTTCAGCAGACCCAACATTGTTAGCAAGTGGGAGTGATGACGGTTCTGTCAAGTTGTGGAATATTAATCAGGCAATTAGACCCAGCATTCTTTTGCATGGAGTCAGTGTTGCTACCATTAAAACAAAGGCAAATGTGTGTTGTGTTCAATTTCCCCTTGATTTTGCTCGTTTCCTTGCATATGGTTCAGCAGATCATCGAATATATTACTATGATCTTCGCAACCTAAAAGTCCCTCTTTGTACATTAGTAGGACATAATAAGACAGTAAGCTACATCAAGTTTGTAGACAACATGAGCATAATCTCTGCATCCACGGATAATACTTTGAAGCTTTGGGATTTGACCATGTGTGCTTCTCGGGTTATAGACTCACCAATTCAAACATTCACAAGTCATATAAATGTGAAGAACTTTGTGGGATTGTCTGTATCTGATGGTTACATTGCTACTGGTTCAGAGACAAACGAGGCATTTTATTTGTCCCTTTTCATTGATTTATTAGTTATCATTGATATATATAATGACCCTCTTTCTGGGAATGAAGTGGATGATTCTACACAGTTCATCACTTCTGTTTGTTGGCGTGGTCAATCCTCCACTTTACTTGCTGCAAATTCCATAGGAAATGTCAAAGTTCTGGAAATGACTTAA 2331 0.3698 MGDVSLRLWLDKFERLVNVFECLHIFRQIAELVHVAHSQGIVVYNVRPSYFVMSSFNYVSFIESVICSNAGSKTLEEIVETKTPTPTPNHDMHQQICLGGEDFVPIKNSTGMLDSSCMLSSVVFSKLASSIGDTEEHKMKNKRKVEEVTEKKQPFPTKQVLQMEVSWYTSPEEVAGATSSLASDVYRLGVLLFELFCPLNSREEKDITMSNLRQRVFPPQLLLKWPKEASFCLLLLHPEPNSRPTIVELLESEFLNEPRDDMEKGEAAVELREKIDDQELLLEFLSLIQQKKREATEKLQHTISFLCSDIEQVMKQKVVFKEIVGSGLGSNDCSTSGFPSFKIVDNDMDSTSLGTRKRVRLDLCVDDTKGFNSNTDDVQESDETILSKSPRVLKYLKKLESSYFLARGKSSYSSRELVVQQSPITIDDGQSNVMTEKSCFNKVALTEQLKGTKSHWKNPFIENLCKYLSFSKLEVKANLKQGDLLQSSNLVCSLSFDRDADFFAIAGINKKLKVFEYDTTINKNRDIHYPIVEMLWDVTRGQVQCEMREHEKRIWSIDFSSADPTLLASGSDDGSVKLWNINQAIRPSILLHGVSVATIKTKANVCCVQFPLDFARFLAYGSADHRIYYYDLRNLKVPLCTLVGHNKTVSYIKFVDNMSIISASTDNTLKLWDLTMCASRVIDSPIQTFTSHINVKNFVGLSVSDGYIATGSETNEAFYLSLFIDLLVIIDIYNDPLSGNEVDDSTQFITSVCWRGQSSTLLAANSIGNVKVLEMT 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03983 776 Pfam WD domain, G-beta repeat 638 673 IPR001680 GO:0005515
Pste1g03983 776 Pfam WD domain, G-beta repeat 542 580 IPR001680 GO:0005515
Pste1g03983 776 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 642 674 - -
Pste1g03983 776 SUPERFAMILY Protein kinase-like (PK-like) 4 257 IPR011009 -
Pste1g03983 776 ProSitePatterns Trp-Asp (WD) repeats signature. 567 581 IPR019775 -
Pste1g03983 776 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 547 582 - -
Pste1g03983 776 Gene3D - 460 776 IPR015943 GO:0005515
Pste1g03983 776 ProSitePatterns Trp-Asp (WD) repeats signature. 660 674 IPR019775 -
Pste1g03983 776 SUPERFAMILY WD40 repeat-like 486 773 IPR036322 GO:0005515
Pste1g03983 776 Gene3D Transferase(Phosphotransferase) domain 1 5 266 - -
Pste1g03983 776 PANTHER PROTEIN SPA1-RELATED 2 3 534 IPR044630 GO:0009640
Pste1g03983 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 547 582 IPR001680 GO:0005515
Pste1g03983 776 PRINTS G protein beta WD-40 repeat signature 660 674 IPR020472 -
Pste1g03983 776 PRINTS G protein beta WD-40 repeat signature 567 581 IPR020472 -
Pste1g03983 776 PRINTS G protein beta WD-40 repeat signature 618 632 IPR020472 -
Pste1g03983 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 642 674 IPR001680 GO:0005515
Pste1g03983 776 SMART WD40_4 540 580 IPR001680 GO:0005515
Pste1g03983 776 SMART WD40_4 635 673 IPR001680 GO:0005515
Pste1g03983 776 SMART WD40_4 481 516 IPR001680 GO:0005515
Pste1g03983 776 SMART WD40_4 735 774 IPR001680 GO:0005515
Pste1g03983 776 SMART WD40_4 592 631 IPR001680 GO:0005515
Pste1g03983 776 ProSiteProfiles Protein kinase domain profile. 1 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03983 Pste-Chr1 21303799 21312886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03983 535 675 Miscellaneous Gene Families AT5G08390 29.577 5.82e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Pste1g03983 WD40 4.9e-06 CL0186