Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03968 ATGGAATCTGCGTACTTTGACTCTAATGGAGAAGTCTCACTAAAGCAAAAATCAAAATCAATTTCAGCACAGCCAACAATCTCAACTAGTGAAAATGATTGCTTTGATTGCAATATTTGCTTAGAATCAGCTCATGACCCTGTGGTCACTCTCTGTGGTCACCTTTACTGCTGGCCATGCATATACAAGTGGCTTGATTTCAAAAGCTCCTCTGTTGAGCAAGACCAGCAACGATCATGCCCAGTTTGTAAATCTGAGATCTCTCACACCTCAGTAGTCCCCCTCTATGGCCGCGGTGGAACATTGAATTCAGAATCCAAAGCCAAGAAACTCCAGATGAATCTGGGAATACCTCACAGGCCAACTGCTTACAACTTGAATGCTATGCTAACTTCAGCTCGAGCTCGGATCCCACATCATAGCCAGCAACTGCATCCAAGTTATTTCCAGCCACAGTCTAGACCAATTCATTATCAGCAGTACATCCCTAACCTTTATGGAGGTTATGGCACCAATGGATTGCCTTATCTTGGAGGTGCTGCAATGACTAGTTTCTTTAATCCTATGATTGGTATGTTCGGGGAGATGGTCTTGACCAGGATTTTTGGGGTCTCAGATGCAAATTTGTTTGCATACCCTCATAATGGAAGTAGTGGCAGTCCTAGAATGAGAAGGCAGGAAATGCAGATTGATAAGTCTCTGAACAGACTTTCAATCTTCCTCCTTTGTTGCATCATTTTGTGTCTTCTCTTATTTTGA 759 0.4282 MESAYFDSNGEVSLKQKSKSISAQPTISTSENDCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLDFKSSSVEQDQQRSCPVCKSEISHTSVVPLYGRGGTLNSESKAKKLQMNLGIPHRPTAYNLNAMLTSARARIPHHSQQLHPSYFQPQSRPIHYQQYIPNLYGGYGTNGLPYLGGAAMTSFFNPMIGMFGEMVLTRIFGVSDANLFAYPHNGSSGSPRMRRQEMQIDKSLNRLSIFLLCCIILCLLLF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03968 252 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Pste1g03968 252 SUPERFAMILY RING/U-box 33 96 - -
Pste1g03968 252 FunFam E3 ubiquitin-protein ligase RMA1H1 10 105 - -
Pste1g03968 252 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Pste1g03968 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 103 IPR013083 -
Pste1g03968 252 Pfam Zinc finger, C3HC4 type (RING finger) 37 83 IPR018957 GO:0046872
Pste1g03968 252 CDD RING-HC_AtRMA-like 35 85 - -
Pste1g03968 252 SMART ring_2 37 83 IPR001841 -
Pste1g03968 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 249 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03968 Pste-Chr1 20946170 20946928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03968 9 238 C3H Transcription Factor Family AT4G27470 47.436 7.89e-56 177