Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03966 AAATGTTCCTCTCACTATTGACAATGCGAAACCTGCATGGAACATGTCTGTGGTTTCTCTTTCTATGGCTACGGGGAAGACCCTTCATGGCAAAGGGGGCCATACCAATATCCATAAGGGTAGTTCTTGATTTGAACTCCTCAATTGGAAGTATGTCTAATAGCTGCATATGGATGGCATACCAGGATTTCTATGAATTCCATCCTCATTACAAAACCAGACTTGCTCTTCAAACCCAAGATTATGGGGGAAATGTTGTCACAGCAGCATCTGTAGTTGAAGAATTGTTGAATGAGAAGGTGCATGCAATTATTGGACCACAGACATCAGAACAAGCTTGGTTCGTTATAGAACTTGGAAGCAAAGCTAAAGTACCCGTAATTTCGTATTCTGCCACAAGTCCCTCACTTTCCCCCACCCAAAAACCTTATTTCATTCGCACAGCGCGGGATGATTCATCTCAAGTGAAAGCTATAGCTGCCATTGTCCAAACTTATGGCTGGCGTGAAATCATCCTCGTATATGAAGACACTGAATATGGAAACGGTCTTAACCCTTATCTTCACGATGCCTTTGTGGAAATTGGCACGCGAGTGGCTTACAGAAGTGTCATTGATCCTCGTTCTGGGGGCACCGAAATTTGGAAGGAGCTCAAGAAGGTGAAGGACATGGCAACAAAAGTGTTTCTTGTTCACATGAGCAGTGAACTTGGATGTATGTTGTTTGTGGCTGCAAAGAAAGAAGGGATGATGAAAATGGGGTATGCATGGATGGTTACTGAAGGCTTATCTGCAGAGGTAGCTCCTATGGTTACAAAATGCATGGATTCCATGCAAGGTGTGTTGGGAATTAGGCCAAGACCAAACTACTCCAAAAGGCTTCAACTTTTTAAAGAAAGATGGAAGGGGTTATCAGGAAAAGGGAACAGTGAGTTCAATGTGTCAAGTGTAACCATCTTTGGATTGTGGGCTTATGACACTGTTTGGGCATTAGCTATGGCTGTGGAGAAAGTTTGGGGGGAAAAATCTCTCTCCCAGAGGCAAAATGGCACCACCCTTCTCAACACAATCCTGGATACTAAATTCCATGGCCTCTCTGGGAATTTCCATTTGAGGAGTATTGGAAATTGGGTGCCAGAGACAGGGCTTTCCAAATTAAAGCAACCAAAATGGCCAGGTAACACAACAGAGCCACCAACAAAGTTGAGGATTGGAATCCCAGTTACAAGTAGTGTCATTGAATTCAAGAAAGTTCTGAACTTCTCTTTCGATGTGTTTTTTGAATCCTTGAAGGTTTTACCCTTTCCCCTGTATTATGATTTCTTCCCTTACATGAAGCATGGGGAGAATGCTGGAACCTATGATGAACTTTTTATGCAAATTCAGCTTAAGGCAATGGTTGGGGACGTGACAATTGTGGCTAAGCGCTCAAATTATGTTGATTTTACAATGCCATTTTTGGAATCAGGGGTGGCAATGTTGGTTTTGGCAAAGCATGATGAGAGACAAAATATTTGGATTTTCTTGAAGCCATTTAGTTGGGACCTTTGGTTGACGACAGGTGCAGCCTTTGTCTTCACAGGTTTCATAGTTTGGTTTATTGAACACCGCTCTAACCCAGAGTTCAGGGGCACTTCAAAGAACCAACTAGGCATGGCTCTCTGGTTTTCCTTCTCAACACTTGTCTTTGCTCAAACCTCAATTCTGACGGTACAGAAACTGCAACCAGTGTTTACAGACACAGAAGAGATAAGAAGAAATAATTACTTTGTGGGTTATCATAAAAATTCTTTTGTGAAAGGGCTACTAATTGAAAAGTTGGGATTCAATGAATCCAAGTTAAAGAGTTACGAGGAACCTGAAGCCTATCAAGAAGCTCTGTCCCTTGGATGCAACAATGGAGGGGTTGCTGCTATTTTTGATGAAATTGTGTTTATTAAACTGTTCCTCATGAAATATGGCACTAAAAAG 1970 0.4203 MFLSLLTMRNLHGTCLWFLFLWLRGRPFMAKGAIPISIRVVLDLNSSIGSMSNSCIWMAYQDFYEFHPHYKTRLALQTQDYGGNVVTAASVVEELLNEKVHAIIGPQTSEQAWFVIELGSKAKVPVISYSATSPSLSPTQKPYFIRTARDDSSQVKAIAAIVQTYGWREIILVYEDTEYGNGLNPYLHDAFVEIGTRVAYRSVIDPRSGGTEIWKELKKVKDMATKVFLVHMSSELGCMLFVAAKKEGMMKMGYAWMVTEGLSAEVAPMVTKCMDSMQGVLGIRPRPNYSKRLQLFKERWKGLSGKGNSEFNVSSVTIFGLWAYDTVWALAMAVEKVWGEKSLSQRQNGTTLLNTILDTKFHGLSGNFHLRSIGNWVPETGLSKLKQPKWPGNTTEPPTKLRIGIPVTSSVIEFKKVLNFSFDVFFESLKVLPFPLYYDFFPYMKHGENAGTYDELFMQIQLKAMVGDVTIVAKRSNYVDFTMPFLESGVAMLVLAKHDERQNIWIFLKPFSWDLWLTTGAAFVFTGFIVWFIEHRSNPEFRGTSKNQLGMALWFSFSTLVFAQTSILTVQKLQPVFTDTEEIRRNNYFVGYHKNSFVKGLLIEKLGFNESKLKSYEEPEAYQEALSLGCNNGGVAAIFDEIVFIKLFLMKYGTKK 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03966 656 Pfam Ligand-gated ion channel 512 564 IPR001320 GO:0015276|GO:0016020
Pste1g03966 656 SUPERFAMILY Periplasmic binding protein-like II 399 653 - -
Pste1g03966 656 SMART GluR_14 400 646 IPR001320 GO:0015276|GO:0016020
Pste1g03966 656 SUPERFAMILY Periplasmic binding protein-like I 71 392 IPR028082 -
Pste1g03966 656 Gene3D - 71 371 - -
Pste1g03966 656 PANTHER OS06G0188250 PROTEIN 29 371 - -
Pste1g03966 656 FunFam Glutamate receptor 150 303 - -
Pste1g03966 656 Gene3D - 505 578 - -
Pste1g03966 656 Gene3D - 398 504 - -
Pste1g03966 656 Pfam Receptor family ligand binding region 59 374 IPR001828 -
Pste1g03966 656 CDD PBP1_GABAb_receptor_plant 37 384 IPR044440 -
Pste1g03966 656 Gene3D - 150 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03966 Pste-Chr1 20848376 20853057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03966 36 655 Ion Channels AT2G29110 36.915 1.17e-144 442