Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03951 ATGGGAGTTCCAGAGAGAGACCCTCTTGCACAATTGAGTTTGCCTCCTGGGTTTAGGTTTTACCCCACTGATGAGGAGCTTCTGGTTCAGTACCTTTGTCGCAAGGTTGCTGGCCACCATTTTTCTCTTCCCATCATTGCTGAAATTGATTTGTACAAGTTTGATCCATGGGTTCTCCCAGGTAAGGCTGTGTTTGGAGAGAAAGAATGGTACTTTTTCAGCCCAAGAGATAGGAAGTACCCAAATGGTTCACGACCAAACAGAGTTGCGGGTTCTGGGTATTGGAAAGCCACTGGAACTGATAAGGTTATCACCACTGAAGGTAGAAAAGTTGGCATAAAAAAAGCACTTGTTTTCTACGTTGGCAAAGCACCCAAAGGCTCCAAAACCAATTGGATCATGCACGAGTATCGCCTTCTCGATTCTTCCCGCAAAAACAACCTCGGAACTACAAAGCTTGATGATTGGGTTTTGTGTCGTATTTATAAGAAGAACTCGAGTGCGCAAAAGGTTGAAGCAAATTTTTTGGCTAAAGAATGCAGCAATGGATCTTCACCTTCTTCATCCTCCCACCTGGAAGACATGCTCGAATCATTTCCGGAAATTGATGACCGGTGTTTCACTCTGCCGCGTGTGAACTCGATCAAAACGATGCAACAGCAGGACGAGAAATTCGGGTTCCAGAACATGGGATCCGGTTTTTTCTCGGATTGGGTTAACCCAACTGAGTTTGATTCTTTGCCCGGGTTTGGGTCGGGTTCCCAAAACCAAGGGATGATGAATTATGAATGTAATGACTTATTTGTCCCTTCTGTGCCACCCTTTGGCCACGTGGAGTTCATGGTCGGGGCACCAACACCGTCTGAGGAAGAGGTTCAAAGCGGTGTGAGAATCCAACGGGCCGACGGACCCGGATGCTTTCAACATAACCCGAATGCCCGATCACTAGCCGGGTCAGGCAACCCATTTGAGTTTGGATTTTTGGATCAACAACTCGGGTTCAAGTTTCGAAACTGA 1017 0.4671 MGVPERDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPGKAVFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITTEGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRLLDSSRKNNLGTTKLDDWVLCRIYKKNSSAQKVEANFLAKECSNGSSPSSSSHLEDMLESFPEIDDRCFTLPRVNSIKTMQQQDEKFGFQNMGSGFFSDWVNPTEFDSLPGFGSGSQNQGMMNYECNDLFVPSVPPFGHVEFMVGAPTPSEEEVQSGVRIQRADGPGCFQHNPNARSLAGSGNPFEFGFLDQQLGFKFRN 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03951 338 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 211 - -
Pste1g03951 338 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Pste1g03951 338 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Pste1g03951 338 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Pste1g03951 338 FunFam NAC domain-containing protein 72-like 23 169 - -
Pste1g03951 338 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03951 Pste-Chr1 20578135 20579543 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03951 1 251 NAC Transcription Factor Family AT1G52890 67.045 1.32e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste1g03951 NAM 2.5e-37 No_clan