Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03949 ACTATACTTATATTTTTCAAAACCAAGTTTCATAGATTTAACTCCTCAAATTCCAAGTTAATTGATATCACCGAAGACTCATCCACCAGTTCACAACAACAACATCAACAACCGAACCTGCCACCCGGGTTTCGGTTCCATCCCACTGATGAAGAGCTCGTTGTTCATTACCTCAAGAAAAAAATTGATTCTATTCCTCTCCCTGTTTCAATCATCGCTGATGTTGATCTCTACAAGTTCGATCCATGGGAATTACCAGCTAAGTCATTGTTTGGGGAGGAAGAGTGGTACTTCTTCAGCCCAAGGGATAGGAAGTACCCAAATGGTGCAAGGCCAAACAGGGCTGCAACTTCAGGGTATTGGAAGGCAACAGGAACAGATAAGCCTATATGTAGTGGAACTCAAAAAATTGGAGTGAAGAAATCTTTGGTTTTCTATGGAGGGAAGCCACCAAAAGGGGTCAAAACCGATTGGATCATGCATGAGTATCGTCTTGCTGAAACCAAACCTACCAATAAGCCTCCCGGGTGTGACTTGGGCCACAAGAAAAACTCACTAAGGCTGGATGATTGGGTGTTATGCCGAATCTACAAGAAGGGCAACACACAAAGGTCACATGTGGACCATGAGAGGGATGATTCCATGGATGACATGATTGGAGAAGTACCTCCTTCCATCAATGTGGGCCACATGAATGCGAGATTTCACCTTTCAAAGATGTCCACGAGCTACAGTGCTGCATTGTTGGAAAATGACAGAAACACATTAGAAGGTGTGGTTATAGGCAATGGTACTGTGAATGGGATCACCACTACTGCAAGAAGTGCCATATCATCATCAACATCTCAGTTTGCTCCTAATTTAAACAACTCTTCAGCCTCCAAAAGAACACTCTCATCACTCTATTGGAATGATGATGATAATGATGACAAACAATTTGGCTTGGACAGTAATGGGAATGTGAGTGTTGTGCGGACTGAGGAGAATAATAACGGTTCTTTTGCTACTCTGCTTAACCATCTTCCACAAACACCTTCATTGCCCCAAATAGGGTCCTTAGGAGATGGGTTGCTTCGGACACCATATCAAATACAAGGGTCCAATTGGTATGGTTAACTCCATTTTGTGGGGTACGATATGATAATTTCATATGGGAAAAACTTACATACAGTATCATAGGTATTGTTAGTATTTTATTTTTTCAATCATATTTAAAGTTTTATCTTGGTAATACAGAAAATATTTAATTTTTTTTTATTTCACGTATTATCGAGATAAAATTCCAAATCTGATTGAAAAACAACATCAACAAAATAAAGTAACTTAAGTACTGTATCTATGCTTTTTCCTTTCATAATTATAATGCAGATGGAGAATCCTCAAACAGTGATATTACAGAGATTTTAAAAGGGTTATTGAGATTGCTGTTTAATTGTTAGGAAAGTGGAAGCACGTACGTTAGAGTACTCTAATCAATGTTTTCCTTCAACCATTTGCAGGTAGCTCCAGGCAATTAATACCACATGAGGTGAGGGCATAAGGCTATGGTACTTTTAGATTTATATATAGACTGATATAGAAAGATAGATATATAGAGATAGATATAGTCATATAGATCTAGAGACATATTTGCTTGTTTCATTGGTGTGTAAAGAAACAAAATGAGGGTGCTATTTGTGTACAAAAAATTTCAAGAGAGGGTAAAAGAAAGAGCCACCCATTCTATATTATATACTTTGCTTTAGGACACAATGAAGAATATATATAGAACATATACTTCTGAACATTAATATATATTGATGCA 1804 0.3769 TILIFFKTKFHRFNSSNSKLIDITEDSSTSSQQQHQQPNLPPGFRFHPTDEELVVHYLKKKIDSIPLPVSIIADVDLYKFDPWELPAKSLFGEEEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPICSGTQKIGVKKSLVFYGGKPPKGVKTDWIMHEYRLAETKPTNKPPGCDLGHKKNSLRLDDWVLCRIYKKGNTQRSHVDHERDDSMDDMIGEVPPSINVGHMNARFHLSKMSTSYSAALLENDRNTLEGVVIGNGTVNGITTTARSAISSSTSQFAPNLNNSSASKRTLSSLYWNDDDNDDKQFGLDSNGNVSVVRTEENNNGSFATLLNHLPQTPSLPQIGSLGDGLLRTPYQIQGSNWYG 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03949 371 ProSiteProfiles NAC domain profile. 40 199 IPR003441 GO:0003677|GO:0006355
Pste1g03949 371 MobiDBLite consensus disorder prediction 25 40 - -
Pste1g03949 371 Gene3D NAC domain 49 204 IPR036093 GO:0003677|GO:0006355
Pste1g03949 371 MobiDBLite consensus disorder prediction 25 44 - -
Pste1g03949 371 Pfam No apical meristem (NAM) protein 41 165 IPR003441 GO:0003677|GO:0006355
Pste1g03949 371 PANTHER NAC TRANSCRIPTION FACTOR 56 40 220 - -
Pste1g03949 371 SUPERFAMILY NAC domain 33 199 IPR036093 GO:0003677|GO:0006355
Pste1g03949 371 FunFam NAC transcription factor 56 49 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03949 Pste-Chr1 20524135 20530609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03949 44 370 NAC Transcription Factor Family AT3G15510 52.975 2.76e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste1g03949 NAM 4.2e-39 No_clan