LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g03949	ACTATACTTATATTTTTCAAAACCAAGTTTCATAGATTTAACTCCTCAAATTCCAAGTTAATTGATATCACCGAAGACTCATCCACCAGTTCACAACAACAACATCAACAACCGAACCTGCCACCCGGGTTTCGGTTCCATCCCACTGATGAAGAGCTCGTTGTTCATTACCTCAAGAAAAAAATTGATTCTATTCCTCTCCCTGTTTCAATCATCGCTGATGTTGATCTCTACAAGTTCGATCCATGGGAATTACCAGCTAAGTCATTGTTTGGGGAGGAAGAGTGGTACTTCTTCAGCCCAAGGGATAGGAAGTACCCAAATGGTGCAAGGCCAAACAGGGCTGCAACTTCAGGGTATTGGAAGGCAACAGGAACAGATAAGCCTATATGTAGTGGAACTCAAAAAATTGGAGTGAAGAAATCTTTGGTTTTCTATGGAGGGAAGCCACCAAAAGGGGTCAAAACCGATTGGATCATGCATGAGTATCGTCTTGCTGAAACCAAACCTACCAATAAGCCTCCCGGGTGTGACTTGGGCCACAAGAAAAACTCACTAAGGCTGGATGATTGGGTGTTATGCCGAATCTACAAGAAGGGCAACACACAAAGGTCACATGTGGACCATGAGAGGGATGATTCCATGGATGACATGATTGGAGAAGTACCTCCTTCCATCAATGTGGGCCACATGAATGCGAGATTTCACCTTTCAAAGATGTCCACGAGCTACAGTGCTGCATTGTTGGAAAATGACAGAAACACATTAGAAGGTGTGGTTATAGGCAATGGTACTGTGAATGGGATCACCACTACTGCAAGAAGTGCCATATCATCATCAACATCTCAGTTTGCTCCTAATTTAAACAACTCTTCAGCCTCCAAAAGAACACTCTCATCACTCTATTGGAATGATGATGATAATGATGACAAACAATTTGGCTTGGACAGTAATGGGAATGTGAGTGTTGTGCGGACTGAGGAGAATAATAACGGTTCTTTTGCTACTCTGCTTAACCATCTTCCACAAACACCTTCATTGCCCCAAATAGGGTCCTTAGGAGATGGGTTGCTTCGGACACCATATCAAATACAAGGGTCCAATTGGTATGGTTAACTCCATTTTGTGGGGTACGATATGATAATTTCATATGGGAAAAACTTACATACAGTATCATAGGTATTGTTAGTATTTTATTTTTTCAATCATATTTAAAGTTTTATCTTGGTAATACAGAAAATATTTAATTTTTTTTTATTTCACGTATTATCGAGATAAAATTCCAAATCTGATTGAAAAACAACATCAACAAAATAAAGTAACTTAAGTACTGTATCTATGCTTTTTCCTTTCATAATTATAATGCAGATGGAGAATCCTCAAACAGTGATATTACAGAGATTTTAAAAGGGTTATTGAGATTGCTGTTTAATTGTTAGGAAAGTGGAAGCACGTACGTTAGAGTACTCTAATCAATGTTTTCCTTCAACCATTTGCAGGTAGCTCCAGGCAATTAATACCACATGAGGTGAGGGCATAAGGCTATGGTACTTTTAGATTTATATATAGACTGATATAGAAAGATAGATATATAGAGATAGATATAGTCATATAGATCTAGAGACATATTTGCTTGTTTCATTGGTGTGTAAAGAAACAAAATGAGGGTGCTATTTGTGTACAAAAAATTTCAAGAGAGGGTAAAAGAAAGAGCCACCCATTCTATATTATATACTTTGCTTTAGGACACAATGAAGAATATATATAGAACATATACTTCTGAACATTAATATATATTGATGCA	1804	0.3769	TILIFFKTKFHRFNSSNSKLIDITEDSSTSSQQQHQQPNLPPGFRFHPTDEELVVHYLKKKIDSIPLPVSIIADVDLYKFDPWELPAKSLFGEEEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPICSGTQKIGVKKSLVFYGGKPPKGVKTDWIMHEYRLAETKPTNKPPGCDLGHKKNSLRLDDWVLCRIYKKGNTQRSHVDHERDDSMDDMIGEVPPSINVGHMNARFHLSKMSTSYSAALLENDRNTLEGVVIGNGTVNGITTTARSAISSSTSQFAPNLNNSSASKRTLSSLYWNDDDNDDKQFGLDSNGNVSVVRTEENNNGSFATLLNHLPQTPSLPQIGSLGDGLLRTPYQIQGSNWYG	371

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g03949	371	ProSiteProfiles	NAC domain profile.	40	199	IPR003441	GO:0003677\|GO:0006355
	Pste1g03949	371	MobiDBLite	consensus disorder prediction	25	40	-	-
	Pste1g03949	371	Gene3D	NAC domain	49	204	IPR036093	GO:0003677\|GO:0006355
	Pste1g03949	371	MobiDBLite	consensus disorder prediction	25	44	-	-
	Pste1g03949	371	Pfam	No apical meristem (NAM) protein	41	165	IPR003441	GO:0003677\|GO:0006355
	Pste1g03949	371	PANTHER	NAC TRANSCRIPTION FACTOR 56	40	220	-	-
	Pste1g03949	371	SUPERFAMILY	NAC domain	33	199	IPR036093	GO:0003677\|GO:0006355
	Pste1g03949	371	FunFam	NAC transcription factor 56	49	204	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g03949	Pste-Chr1	20524135	20530609	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g03949	44	370	NAC Transcription Factor Family	AT3G15510	52.975	2.76e-113	333

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Pste1g03949		NAM	4.2e-39	No_clan

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