Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03895 CCACAAGCTACGAAAGAAAAAGTTTTAAGAGGATTTGTGAGATGGGACGTGGAAAAATTGAGATAAAGAGAATCGAGAACACCACCACAAGGCAAGTGACTTTCTCCAAAAGAAGAGGTGGCCTCATGAAGAAGACAAAGGAACTTTCTGTGCTTTGTGATGCACAGATCGGGCTTATCATCTTCTCCAGCACTGGCAAAATGTGGGAATGGTGCACTGAACCCTTCAGGATGGAGCAAATCATAGAGAAGTATCAAAGATCAACGGGAGCTTGCTTAGTGGAACGTGATCATCCACGAGAAGAATTTTTGCATGACATGGCAATGCTGAGGCAGGAAACTCTCCGTCTTGAAATGGGAATTCAACGCTATCTTGGAGAGGACATGGGGTGTTTACAATATGATGATTTGTCTAAACTTGAACAAGAATTAGAGAACTCTGTTGCAAAGATTAGAAACCGTCAGAATGAACTATTGCAACAGCAAATGGAGAATCTGCGAAGGAAGGAAAGGATCTTGGAAGAGGAAAACAACAATTTGTCCAATTGGGGAGCAGTAATGGAGGCCACAGTGGAAGGAAGCAAAGGAATGCATGTGATGGATCAGTTCCCATTCTTTGAAGAGCAACCTGCTGGTAGCATCCTTCAACTTGCTTCCCCTGTGCTTCCACACTTTCACCCTTATCTTCAGCTTGCACAGCCCAATACCCATAACCATGGGCATATGTAGTGGGTGGGTTAATGCTATCTGCGTACGCGGAGACAGAGAATCATGGCTTGTACTTGACATGCAATAATAACTTGCTACCTTTCTTTATTTTATTCTCTTCAACCTCGTGTGTACATCAAACTTCCTTTTTCTTTTAATTTGGACTAGAAGCC 880 0.4295 MGRGKIEIKRIENTTTRQVTFSKRRGGLMKKTKELSVLCDAQIGLIIFSSTGKMWEWCTEPFRMEQIIEKYQRSTGACLVERDHPREEFLHDMAMLRQETLRLEMGIQRYLGEDMGCLQYDDLSKLEQELENSVAKIRNRQNELLQQQMENLRRKERILEEENNNLSNWGAVMEATVEGSKGMHVMDQFPFFEEQPAGSILQLASPVLPHFHPYLQLAQPNTHNHGHM 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03895 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pste1g03895 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pste1g03895 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pste1g03895 228 Coils Coil 120 169 - -
Pste1g03895 228 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Pste1g03895 228 Pfam K-box region 84 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste1g03895 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste1g03895 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pste1g03895 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pste1g03895 228 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Pste1g03895 228 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pste1g03895 228 ProSiteProfiles K-box domain profile. 86 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste1g03895 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03895 Pste-Chr1 19873932 19880103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03895 1 224 MADS-box Gene Family AT5G23260 46.559 2.89e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste1g03895 K-box 1.4e-18 No_clan