Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03891 ATATGGAAGAACAAGGAGAACAATGTCAGGTAAAAGTTCAATCACTCGTCGGGACGCAAGACATGGCTTGCACAAATTGAGAAATTTTGATTCTGCTGATCTAGAATGGACCAGTAGGATTCCAGAGTGTCCAACTTACCACCCATCAGAACATGAGTTTGAGGATCCTTTAGTTTATCTACAGAAGATAGCTCCCGAGGCTTCTAAGTATGGTATATGCAAAATTGTTTCTCCAATTTCAACCACTAACCCAGCTGCTTTTGTCTTAATGAAAGAGAAAAAAGATTTCACATTTGAAACAAATGTACAGCCTCTTCGTATTTCTACATGGAATGAAAAGGAGGATATAATAACCTTTTCTATGAGAGGCAGAAAATATACATATAATGAATTTGAGGCTCTTGCAAACAAGGCTTTTATCAATAGATTTCACAGTGCAAGATGTCTTCCTTCTTCATATGTTGAAAAAGAGTTCTGGCATGAGATGATTCATGGAGAGAAGGGAACAGTTGAGTATGGAGTCAATGTTGAAGGTAGTGCCTTTTCATGTGATCCTGATGACAGGCTTGGAACAAGCAAATGGAATTTGAAGGTTGTTTACACACTTTACGCTAACTCCATTTCTTTAGGAATAACTGATCCTATGCTTTACATTGGAATGTTGTTCAGTATGTTTGCATGGCATGTCGAAGATCATTATTTGTACAGCATAAATTATCATCACTCGGGTGCAAATAAAACTTGGTATGGCGTGCCTGGCTATGCCGCCACTCAATTTGAAAAGACTATCTTACAACATGTGTATTGCAATAAGATCTTGACAAAACATGGAGAGGATGGAGCATTCAAGTTCCTTGCACAAAAAACAACCATGTTCCCACCAAATGTCATGTTACAACATGATGTGGCCGTTTACAAGGCTGTACAGAAGCCAGGAGAGTTTATCATCACATTTCCTAGAGCATATCATGCTGGATTTAGTCATGCTAGCAGGCGTTATGCACAGCTCAAAATGATGCCTTTAATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGTTGGTTTACAAGTCTTCAAGAATCAGAAGTTCAAAGAACAAACCTGAAGACACAACATCTTATCAAGCTATTATTCCATCTTTCTTGCATCTTATGCAATTTCATAAGACATGCATTTTGCGAATGAACAAATCGAGGAAGTTTTCAAGTTCTTTAATTACATCAGGTTCTCAACTATGCAGCCTTTGTCACAGAGATTGTTATGTAGCTTACTTGCTATGCAAGTACTGCAATTCTCATCCAATTTGTCTTTTC 1315 0.3779 MSGKSSITRRDARHGLHKLRNFDSADLEWTSRIPECPTYHPSEHEFEDPLVYLQKIAPEASKYGICKIVSPISTTNPAAFVLMKEKKDFTFETNVQPLRISTWNEKEDIITFSMRGRKYTYNEFEALANKAFINRFHSARCLPSSYVEKEFWHEMIHGEKGTVEYGVNVEGSAFSCDPDDRLGTSKWNLKVVYTLYANSISLGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPGYAATQFEKTILQHVYCNKILTKHGEDGAFKFLAQKTTMFPPNVMLQHDVAVYKAVQKPGEFIITFPRAYHAGFSHASRRYAQLKMMPLIPYEELLCKEAMLVYKSSRIRSSKNKPEDTTSYQAIIPSFLHLMQFHKTCILRMNKSRKFSSSLITSGSQLCSLCHRDCYVAYLLCKYCNSHPICLF 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03891 431 PANTHER LYSINE-SPECIFIC DEMETHYLASE 28 420 - -
Pste1g03891 431 SMART JmjN_1 35 76 IPR003349 -
Pste1g03891 431 Pfam JmjC domain, hydroxylase 208 322 IPR003347 -
Pste1g03891 431 SMART cupin_9 181 338 IPR003347 -
Pste1g03891 431 ProSiteProfiles JmjC domain profile. 178 350 IPR003347 -
Pste1g03891 431 SUPERFAMILY Clavaminate synthase-like 199 340 - -
Pste1g03891 431 Gene3D Cupin 20 324 - -
Pste1g03891 431 Pfam jmjN domain 37 69 IPR003349 -
Pste1g03891 431 ProSiteProfiles JmjN domain profile. 36 77 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03891 Pste-Chr1 19810906 19813665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03891 19 320 JUMONJI Transcription Factor Family AT2G34880 32.418 7.22e-44 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pste1g03891 JmjC 4.3e-33 CL0029