Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03860 GCTGGTCAACTAAGTTTTGTAGTGGGGTCCCATGTTTGGATTGAGGACCCTGAGGTAGCTTGGCTAGATGGAGAAATTCAGGAATCTAGAAATGGAGAGATCACAGTTATCCATGAATCAGGCTCAAAGATATTGCATTTATTTTCTGGATTGACCTCTCTATTCTGCTATGTTTTGGCTGTCACAGTCATTTGTGATGAAGATTTAACTTTTGTTCATGGTACATACACAGGAAATATATTGATAGCCGTGAACCCTTTTAAAAGGTTACCACATTTGAGTGAAACTAGTACCATGGCAAAGTATAAAGGTGCGGCTTTTGGTGAGCAGAGCCCCATCCTTTTGCAATTGCAAATGTGTCTTCATTCCCTAACAAAGATAAGTATCTGCAGCAAGATGATAAACGAAGGAAAAAGCCAATCTATTTTGGTTAGTGGAGAAAGTGGAGCTGGTAAAACTGAAAGTACAAAGATGCTTATGCATTATCTTGCCTTTTTGGGAGGGAGAAAAGCAACTGAAGGACGGTCTGTGGAGCAACAAGTTCTGGAGTCCAATCCAGTTTTGGAAGCATTTGGCAATGCTAAGACTGTTAGGAATAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGATCAAAAGGGGAGAATTTCAGGAGCTGCTATCAGAACATATTTGCTGGAACGATCTCGCGTGTGTCAAGTGTCTGATCCTGAGAGAAATTATCATTGCTTTTATATGCTTTGTGCTGCACCAAAGGAGGATATTGATAAGTACAAATTGGGAAATCCAAGAAAATTTCATTACCTTAATCAATCAAATTGCATTGAGCTGGATGGATTGGATGACTCTAAGGAATACATTGCAACTAAGAGAGCTATGGAGGTTGTTGGGATTAGCTCTGACGAGCAGGACGCTATATTTCGAATAGTAGCTGCAGTACTTCATTTAGGAAACATTGAATTTGTTAAGGGAAGGGAAGAGGAATTGGATTCCTCTCAACCCAAGGATGAAAAATCCTATTTCCACCTAAAAACCGCAGCCGAGCTTTTTATGTGTGATGAGAAGTCCCTTGAAGACTCTTTCTGCAAACGTGTTATGGTGACTCGTGGTGACACCATAACAAAATCGCTTGATCCAAATGCTGCAGCTCTCAGTAGAGATGCATTGGCTAAAATAGTTTATTCAAGGCTTTTTGACTGGATTGTGGAGAAGATTAACAACACTATTGGGCAAGATCCAGATTCAATTCACTTGATTGGGGTTCTAGATATCTATGGATTTGAGAGTTTCAAGACAAACAGCTTTGAGCAATTTTGTATCAATTTGACAAATGAGAAATTACAGCAACATTTCAACCAGCATGTCTTCAAAATGGAGCAAGAGGAATACACAAAGGAAGAGATTGATTGGAGTTATATTGAGTTTGTCGATAATCAAGATGTTCTTGATCTCATAGAGAAGGTTATGTTTCCAAGATCAACGCATGAAACATTTGCTGAAAAGCTATATCAAACTTTTAAAGACAACAAACGCTTCAGCAAGCCAAAGTTGTCTCGCACTGACTTCACAGTTAACCACTATGCTGGTGACGTTACTTATCAAACTGATTTTTTCCTTGATAAAAATAAAGACTATGTTGTTCCAGAGCATGCCGCTCTACTCAGTGCTTCAAAGTGCCCCTTTGTTTCAGGGCTGTTCCCACCTTTACCTGAGGAAACTACAAAATCGACAAAGTTCTCTTCTATAGCCAATCAGTTTAAGCAACAACTGCAATCTTTGCTTGAAACACTAAATGCTACCGAGCCACACTACATTCGTTGTGTAAAGCCAAATAATCTTCTGAAGCCAGGGATTTTCGAGAACAATAATGTGTTGCAGCAACTTCGATGTGGAGGAGTAATGGAGGCAATTCGGATAAGTTGTGCTGGATATCCCACTAGAAAGAACTTTGATGAATTTGTTCAGCGGTTTACTATCCTGGAACCTAAGGTTCTGAAAGCATGTCCTAATGAGGTGACTGCTTGCAAGAGGCTTCTAGAGAGAGCAAATCTTAAAGATTATCAGATTGGAAAGACAAAAGTGTTTCTGAGAGCAGGTCAAATGGCAGAACTAGATGCATGTCGTGCTGAGGTCTTGGGAAGATCTGCATGCGTTATTCAGAAAAAGGCCCGCATGTTTATTGCTCGGAAACACTACGTTTTAGTGCAGTTGTCTGCCATAGAAATTCAAAGGGTTGCTAGAGGACAACTTTCACGATATCAATTTGAATCCATGAGGAGGGAAGCTGCTTCTTTGAAAATCCAGAAAGACTTCCGCATGTATATTTCCAGAAAAGCTTACAAAACTCTTTATGCCACAGCCGTTTATATTCAAACTGGTATGAGAGGGATGGCCGCTAGAAATGAACTTAGATTCCGGAAACGGACACAGGCTGCAATTGTTATTCAGGCTCACTACAGAGGTTATTCAGCGCATACTTATTTCCGGAAGCTAAAGAAAGCAGCAGTTTTTGCACAGTGTTCCCGGAGGAGAACATTGGCACGTAGAGAACTTCGAAAGCTTAAAATGGCTGCCAAGGAATCCAAGGCACTTGAAGCTGCCAAAAATAATCTGGAAAAGCAAGTCAAAGAATTAACTTTGTCTCTAGAAACAGAGAAGGAAATGAGGGAAGCCAAGACACAGGAAAATGAAAAACTACAGCATGCTTTGCAAGAGATTGAGCTTCAGCTGCAAGAAACTAAGGAAGCCAAGACACAGGAAAATGAAAAACTACAGAATGCTTTGCACGAGATGGAGCTTAAGTTGCGAGAAACTAACGAAGCCAAGACACAGGAAAATGAAAAACTACAGAATTCTTTGCAAGAGATGGAGCTTCTGTTGCAAGAAACTAAGGAAGCCAAGACACAGGAAAATGAAAAACTACAGAATTCTTTGCAAGAGATGGAGCTTCTGTTGCAAGAAACTACGGAAGCCAAGACACAGGAAAATGAAAAGCTACAGAATGCTTTGCAAGAAATGGAGCTTCAGTTGCAAGAAACTACGGAAGCCAAGACACAGGAAAATGAAAAGCTACAGAATGCTTTGCAAGAAATGGAGCTTCAGTTGCAAGAAACTACGGAAGCCAAGACACAGGAAAATGAAAAGCTACAGAATGCTTTGATAGAAATTGAGCTTCAGTTGCAAGAAACTAAGGAAGCCAAGACACAGGAAAATGAAAAGCTACAGAATGCTTTGCAAGAAATGGAACTTCAGTTGCAAGAAACAAAGGCAGCGCTCATTCAGGAACGAGAGGCTGCCAAGAAAGTAGATGAGCAAACTCCAACTACAGAGGAAAATTCTATTAATGATCAAGTTAATTTGTTGGAAAGAAAAATTGATGAAACGGAGAGGAAATATGAAGAATGTAGCAGGCTTAGTGAGGAGCGCATGAGTCAAATTATAGAGACAGAATCAAAGATGATTGAGATAAAGACGAATATGCAAAGGCTTGAAGAAAAATTATCTGATATGGAAACTGAGAATCAAGTTTTGCGGCAGCAAGCCTTGTTGAGTTCATCATCCAGGAGAATGTCAGGAAAGTTTGCACCTGTTACAACTCCGCCTTTGGAAAATGGTACTCAGGCAGCCGTAGTGCAGAGTTCTATTCCTGCAAAAACATTTGGTTCACAGGATAGTAAAGGAAGGAGATCTATAATGGAGAGGCATCAAGAGAGTGTAGATGCTCTTTTCAAATGTGTGACAAAAGATCTTGGGTTCTGCGAAGGAAAACCTGTTGCAGCATTTACCCTTTACAATTGTCTATTACATTGGAAATCTTTTGAAGCAGAAAAAACAAGCATATTTGATCGTCTGATTCAGCTGATTGGTTCCGAAATAGAGGATCCAGACAAGAATGATTGTATGGCTTATTGGCTATCCAATACATCTTCATTGTTTTTCCATCTACAGCGATGTCTAAGAGTACCTACAGCACGGAAACCACCTACTCCAACATCGTTTTTTGGGAGGATGACCCAGGGTTTCCGTTCATCTAATAGTCTTTCCAGCAGTGCTTTTGATGTAGTGCATCAGGTTGATGCCAAATATCCAGCTTTGCTTTTCAAGCAGCAGCTTGCAGCTTATGTGGAAAAGATATATGGAATCGTTCGAGAAAATTTTAAGGAAGAATTGTCACCTATACTTTCTTCTTGTATTAAGGCGGAGAAAACATCAAGTGAAAACAACCAACCAACTTGGATCAGCATTATCGAATGCCTTAATAAATATCTCAACATTCTGAAAGAAAACTATGTGCCTGGGGTTCTTGTTCAGAAGCTATTTAATCAAATTTTTCAATACATCAATGTGGAAATCTTTAATAGTAACGGACTAATTAAAGGCATCCGGTTGAATTGTCAATTGGGAATGCTTTGTTCTTCCAGCATTCTTTTACACCAAGAATACTGCACATTAAAAAATGGAGAATATATAAAATCAGGGTTAGCTGAACTAGAACAATGGGGTACTGAAGCACAAGAAGAGTATGTTGGCTCATCTTTGGATGAACTCAAGCACGCAATGCAAGCAGTTAGCTTCTTGGTTGCACCAAAGAAGGAGGAGTTATCCTATGATGATCTTACAAATGACCTCTGCCCTTTCCTTAATGATGTGCCTGCATTTAAACATGGTATAGCACATTATCACTAA 4695 0.3966 AGQLSFVVGSHVWIEDPEVAWLDGEIQESRNGEITVIHESGSKILHLFSGLTSLFCYVLAVTVICDEDLTFVHGTYTGNILIAVNPFKRLPHLSETSTMAKYKGAAFGEQSPILLQLQMCLHSLTKISICSKMINEGKSQSILVSGESGAGKTESTKMLMHYLAFLGGRKATEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPKEDIDKYKLGNPRKFHYLNQSNCIELDGLDDSKEYIATKRAMEVVGISSDEQDAIFRIVAAVLHLGNIEFVKGREEELDSSQPKDEKSYFHLKTAAELFMCDEKSLEDSFCKRVMVTRGDTITKSLDPNAAALSRDALAKIVYSRLFDWIVEKINNTIGQDPDSIHLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKVMFPRSTHETFAEKLYQTFKDNKRFSKPKLSRTDFTVNHYAGDVTYQTDFFLDKNKDYVVPEHAALLSASKCPFVSGLFPPLPEETTKSTKFSSIANQFKQQLQSLLETLNATEPHYIRCVKPNNLLKPGIFENNNVLQQLRCGGVMEAIRISCAGYPTRKNFDEFVQRFTILEPKVLKACPNEVTACKRLLERANLKDYQIGKTKVFLRAGQMAELDACRAEVLGRSACVIQKKARMFIARKHYVLVQLSAIEIQRVARGQLSRYQFESMRREAASLKIQKDFRMYISRKAYKTLYATAVYIQTGMRGMAARNELRFRKRTQAAIVIQAHYRGYSAHTYFRKLKKAAVFAQCSRRRTLARRELRKLKMAAKESKALEAAKNNLEKQVKELTLSLETEKEMREAKTQENEKLQHALQEIELQLQETKEAKTQENEKLQNALHEMELKLRETNEAKTQENEKLQNSLQEMELLLQETKEAKTQENEKLQNSLQEMELLLQETTEAKTQENEKLQNALQEMELQLQETTEAKTQENEKLQNALQEMELQLQETTEAKTQENEKLQNALIEIELQLQETKEAKTQENEKLQNALQEMELQLQETKAALIQEREAAKKVDEQTPTTEENSINDQVNLLERKIDETERKYEECSRLSEERMSQIIETESKMIEIKTNMQRLEEKLSDMETENQVLRQQALLSSSSRRMSGKFAPVTTPPLENGTQAAVVQSSIPAKTFGSQDSKGRRSIMERHQESVDALFKCVTKDLGFCEGKPVAAFTLYNCLLHWKSFEAEKTSIFDRLIQLIGSEIEDPDKNDCMAYWLSNTSSLFFHLQRCLRVPTARKPPTPTSFFGRMTQGFRSSNSLSSSAFDVVHQVDAKYPALLFKQQLAAYVEKIYGIVRENFKEELSPILSSCIKAEKTSSENNQPTWISIIECLNKYLNILKENYVPGVLVQKLFNQIFQYINVEIFNSNGLIKGIRLNCQLGMLCSSSILLHQEYCTLKNGEYIKSGLAELEQWGTEAQEEYVGSSLDELKHAMQAVSFLVAPKKEELSYDDLTNDLCPFLNDVPAFKHGIAHYH 1564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03860 1564 Coils Coil 1114 1141 - -
Pste1g03860 1564 Gene3D Myosin VI head, motor domain, U50 subdomain 302 581 - -
Pste1g03860 1564 Pfam Myosin N-terminal SH3-like domain 9 43 IPR004009 GO:0003774|GO:0005524|GO:0016459
Pste1g03860 1564 Gene3D - 431 603 - -
Pste1g03860 1564 SMART MYSc_2a 61 713 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste1g03860 1564 Gene3D - 715 764 - -
Pste1g03860 1564 Gene3D - 813 862 - -
Pste1g03860 1564 Gene3D - 765 812 - -
Pste1g03860 1564 FunFam unconventional myosin-Va 814 861 - -
Pste1g03860 1564 FunFam unconventional myosin-Va 765 813 - -
Pste1g03860 1564 Pfam IQ calmodulin-binding motif 765 784 IPR000048 GO:0005515
Pste1g03860 1564 Pfam IQ calmodulin-binding motif 717 735 IPR000048 GO:0005515
Pste1g03860 1564 Pfam IQ calmodulin-binding motif 812 832 IPR000048 GO:0005515
Pste1g03860 1564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 766 862 IPR027417 -
Pste1g03860 1564 ProSiteProfiles Myosin motor domain profile. 75 712 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste1g03860 1564 SMART DIL_2 1441 1556 IPR002710 -
Pste1g03860 1564 PRINTS Myosin heavy chain signature 139 164 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste1g03860 1564 PRINTS Myosin heavy chain signature 421 449 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste1g03860 1564 PRINTS Myosin heavy chain signature 474 502 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste1g03860 1564 PRINTS Myosin heavy chain signature 186 213 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste1g03860 1564 PRINTS Myosin heavy chain signature 74 93 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste1g03860 1564 Gene3D - 647 710 - -
Pste1g03860 1564 Coils Coil 857 1108 - -
Pste1g03860 1564 ProSiteProfiles Dilute domain profile. 1285 1564 IPR002710 -
Pste1g03860 1564 FunFam Myosin heavy chain 242 297 - -
Pste1g03860 1564 Gene3D Kinesin motor domain 75 642 IPR036961 -
Pste1g03860 1564 PANTHER MYOSIN 1050 1548 - -
Pste1g03860 1564 Gene3D - 242 300 - -
Pste1g03860 1564 Pfam DIL domain 1442 1552 IPR002710 -
Pste1g03860 1564 ProSiteProfiles IQ motif profile. 739 767 IPR000048 GO:0005515
Pste1g03860 1564 Coils Coil 1149 1183 - -
Pste1g03860 1564 SMART iq_5 714 736 IPR000048 GO:0005515
Pste1g03860 1564 SMART iq_5 810 832 IPR000048 GO:0005515
Pste1g03860 1564 SMART iq_5 833 855 IPR000048 GO:0005515
Pste1g03860 1564 SMART iq_5 737 759 IPR000048 GO:0005515
Pste1g03860 1564 SMART iq_5 762 784 IPR000048 GO:0005515
Pste1g03860 1564 SMART iq_5 785 807 IPR000048 GO:0005515
Pste1g03860 1564 FunFam Myosin 2 302 419 - -
Pste1g03860 1564 Pfam Myosin head (motor domain) 75 700 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste1g03860 1564 ProSiteProfiles IQ motif profile. 834 863 IPR000048 GO:0005515
Pste1g03860 1564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 766 IPR027417 -
Pste1g03860 1564 CDD MYSc_Myo11 75 700 IPR036018 -
Pste1g03860 1564 ProSiteProfiles IQ motif profile. 763 789 IPR000048 GO:0005515
Pste1g03860 1564 ProSiteProfiles IQ motif profile. 786 815 IPR000048 GO:0005515
Pste1g03860 1564 ProSiteProfiles IQ motif profile. 811 837 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03860 Pste-Chr1 19492535 19512299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03860 1407 1551 Myosins gene family AT1G04600 49.660 4.31e-32 135