LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g03834	ATTAGTCTCAGTTACCCCTTCACAGCACCACACATATGACATTACACAACACAACAAACTGACACAGCATCCTTATTTTCATCAAATATTTTTATGTTTATGTGAAGAGTGAAGACAGAAGAATTAGCAGCACCCCACTAGAAATATCAGCCATGTCAGATGAACAATTTCAAGCGAGTGGAAACTGGTGGGAATCTGCAAGAAACGTGAGGTTTGAGAGTGGTGAGTCACAGTCTTCTTCTTCTGCCCTCACCAACATGGGAAACTATGCTTGGCAGCAACAACATGATCATCATCATCATCATCACATGGCAAGGTCTTCTTCTTCTTCCATGGATAACTCTGCCTCAGGTGGTGGTTCCTCTGTGGTTTTCCATGACCAGAAGCAGCAGCAGCAGCTGCAAGTTCAGCCACACCATGACTCAGCAGCCACTTCAACCAATGACCCCAACTTGCACATGATGGGCTTGGGCCTCTCATCCCAGGCCATGGACTGGAATCAAGCATCTTTGCAGCTGCGAGGTGAGAAGGGTTCAGAGGGAAGGTTCAGGTCGATGTTGCAAGAGAATTTGAGCTCATCAGGCACAAATTTTCAGCAAGAAAGTGGGAACAACAATATTGGGCTGTCACAACACCATCATCATCAACAACAAGTTCATTGGAGGCCTGAAAAGTTGTTCTCTGCTGAGTCATCAAGCAATGAATTCAAGAGGGGTTTCTCCTTGGACCAAACTCAGTTTAGCCCTCAATATAGCTCTGGGGACAGCACAGTCACAACCCAAGGTTTGCCTTGTTCTTTTCAGATGGACTATGTTGGGAATCCTTCTTCAATATTGCAAGGACTTCTGGGACAAGAGAGCAATAACCAACAACCCCACCAAGGCGGTGCTAGTGGTGGTTCGTTTGAGAATCGTTCCATGAATTTTCCTTACTCAGCAGCAAGCTATGGATTAAACTCCAATATTGAGTTGGTGCCTTCTTGGTCTAAAGTTCCTCAGTTTCTGAGAGCTTCACCACCAAAACAACCACCCACTAACCAGTTGCATTTCACCAACAACGCTCCCTTTTGGAACGCTAATTCTGAACCTTCTATCAAGGATGCTCGATCCAACTTCATCCCTTCCTTGCAACCCCCTTTCTCCACATCAAATTTCGATGTACAACCAAAGAATCTATCTGAAGTTAGAGACTCTGGTGGTGTGGTGAAGAAAAGTGGGAGTGAGGCAGCACCCAAAAGGCCAAGGAACGAAACCCCATCTCCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGAGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCGTCAGTGCTCTCAGAAGCCATTGAATATATCAAATTCCTCCATGAACAAGTGACTGTTTTAAGCACCCCGTATATGAAAAGTGGCGCTCCCATACAGCATCAGCAGAGTTCTGGAAAATCTAAGGAATCTGAGGGTCCAAAGCAGGATCTTAGGAGCCGAGGGCTATGTTTGGTGCCAGTTTCTAGTACATTTCCAGTGACTCATGAACCTACAGTTGAGTATTGGACACCAACATTTGGAGGAACTTACAGATAGCTAATTAACTAATGGTGACAAAAGTGGCACAGAAGCAGTACTCTCACTCAGCAACTAGAACCACATATAAGTCTTATCAAAACCTGGCCAAGTTGGGAATGATAAGATGAAAGAAAAGAGAAAAGCCACATAAATATGTAAAGTTAGTTAGTTCTTCTGTGATGGAAATTAAAGATATTTGATTTTAGAAAAAAAAGGATATAGAGAGAGGGAAAATGGTTGAAAAAAGAGGGGGAAAGAAAGGGAAATGACCCTTCACAAGAAGGGTCATTATGGACCAACTTCATGCAGATCAATGATGCAGGGTAAGGTAATTTGGCCAATTTTTGGGACCATTGGAGTACACTATATATTTAAGATGTTTTTTTTTTTTAATAATTGAAGAATTATGTATGCACACAAAAGGGTGGTGGATTAGGAGTGACAAAATATAAGGTGCTGAATATAGGGAAAGTTCTTGGTCTAAACTAGGTAGAGAAATTGTTGTTAGGAGAAGACAAAAGGAGCTTTGTTAATTTTTCTTCTTGTTATTTTGTGAATAGAGCTGGAACTACCCCTTTAGTTCAAGAAAAGAAAAAAGGAAACTAATTTGAAGGAATCATTGAAATATAGAAGAGGTGAGTGAGTGTGGGATATGTCATTTGATTGGAAATCTCACTTTTGATTTGTTTATTTCTTTAGAATATGTAAGTGGAAGTCAGAGGAGGGTGGC	2322	0.419	MSDEQFQASGNWWESARNVRFESGESQSSSSALTNMGNYAWQQQHDHHHHHHMARSSSSSMDNSASGGGSSVVFHDQKQQQQLQVQPHHDSAATSTNDPNLHMMGLGLSSQAMDWNQASLQLRGEKGSEGRFRSMLQENLSSSGTNFQQESGNNNIGLSQHHHHQQQVHWRPEKLFSAESSSNEFKRGFSLDQTQFSPQYSSGDSTVTTQGLPCSFQMDYVGNPSSILQGLLGQESNNQQPHQGGASGGSFENRSMNFPYSAASYGLNSNIELVPSWSKVPQFLRASPPKQPPTNQLHFTNNAPFWNANSEPSIKDARSNFIPSLQPPFSTSNFDVQPKNLSEVRDSGGVVKKSGSEAAPKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQHQQSSGKSKESEGPKQDLRSRGLCLVPVSSTFPVTHEPTVEYWTPTFGGTYR	485

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g03834	485	Gene3D	-	375	437	IPR036638	GO:0046983
	Pste1g03834	485	MobiDBLite	consensus disorder prediction	57	105	-	-
	Pste1g03834	485	MobiDBLite	consensus disorder prediction	43	105	-	-
	Pste1g03834	485	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	365	414	IPR011598	GO:0046983
	Pste1g03834	485	MobiDBLite	consensus disorder prediction	429	453	-	-
	Pste1g03834	485	FunFam	Transcription factor bHLH123 family	375	437	-	-
	Pste1g03834	485	MobiDBLite	consensus disorder prediction	140	163	-	-
	Pste1g03834	485	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	375	432	IPR036638	GO:0046983
	Pste1g03834	485	PANTHER	TRANSCRIPTION FACTOR BHLH83-RELATED	116	466	-	-
	Pste1g03834	485	CDD	bHLH_AtbHLH_like	371	422	IPR045239	-
	Pste1g03834	485	MobiDBLite	consensus disorder prediction	140	171	-	-
	Pste1g03834	485	SMART	finulus	376	420	IPR011598	GO:0046983
	Pste1g03834	485	MobiDBLite	consensus disorder prediction	345	373	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g03834	Pste-Chr1	19187853	19192358	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g03834	123	485	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT3G20640	47.409	1.42e-81	256