Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03815 ATGGGAAATAAATCAGATACCAAAGCTGGTGACAATGCTGTGCCACTACCCCTAATCGGTAAGAGAGAGGGTGAGAATGAAGACGAGCAGCAAGTGAGTGCAAAGAAGCACAAGAGAGATGAGGTTTCCGAGGAGCAAAGGAATAAGGACGAAATTGTTTCAGATAGTTCCTTTTCAGATTCTGAACCTGATAAGAATCCTGAAGCTAAAAAGGAGTCTCTAAGTAAAGAGGAGAAGAAAGGCAAACCTGCTAGTGCAAACTGTTCAATTTCTTTGGAGTCATTGGCTGATGGTTCTCTGGAGGATGAAGGTAATATGGATATTGATAAGGGTGATAATTCTGAAGAAAGTGATGAAGAAACACAAAAAAAGATGGAAGTTTTGTCTAAAATGCGAGCTACACCAAATGAACAAAATTATGCATCGAATACAATAATTACTAGAAACTTGTCATTCAGTGTGGAACGAGCTGATTTGGAAACTCTTTTCAAAGAGTGTGGGGAAATAGTTGATATTCGTCTACATACGGATTTTGAAGGGAGGTTTCTAGGCTTTGGACATGTTGAGTTTGCAACAGCGGAAGCGGCACAACAAGAGGATATTTTGGGGTTTTTTTGGCTATGGCGTAGTCGACAAGGAGGATCACATGGAAGTAGATGTGGTGATATAGTAGAAGATGTTAATGAAATTGAGGATGAGGGGTTTGAGACCTCACCACCAGTTGAGGAGGACAGTGATGTGACAGATTGTGAGGGGCTATGTCGATCGAGGGAGAGGGGCATTGAGGGATTGGTGGAGAGAGCGGATTTGAAGGCTCTTCAGTTAAATAATACAGAATTGTTGAAATGTCGCATCAAAATTGGTATAGCACGGCAAAAGTATAAGCCTACCCCCAATAGAAGCTTCCATGCTAATTTTAGCAACTCGAGTAACACATTTCAAAAGGGTGAAAGAAGTCTGCCTATGAAAGGTTCAGAGATTTCAGGGGACTGTAAAGAAACTGAGCCAAAGATGCTTACAACTTGCAAAGAACAAAGTGCTACATCAAAGACAATTTATGCTGGAAACTTGTCATACAGTATGAAGCAGGCTGATATGGAATTTTTTTTCAAAGAGTGTGGAGAAATTGTTGATATTCGCCTACATACATCTAGAGGCTATGGACATGTTGAGTTTGCAACCACAGAAGCTGCACAAAAAGCTCTTGACTTGAATAATACTCTATATTTGGGACGTCGGATTGGAGTTTTCATTGCTCAAAAAAAGGGTGAATATATCTCTAATAGAAGCAACTGGAGCAAGTCATTTTACGAGAGTGAAAAAACTCAGCCCATCAGAAGTACAGAGAGTTCAGAGAACTGTAAGCAGGAGATTGAGGGAAAAACCTCCAAAAGTCCTTGGGAAAGTTCTAAAAGGCTAGCTACTTTGGAAAGACAAAATGCTCCATCAAAGATAATATCTGTCAGAAACTTGTCATACAGTGTCCTACAGACTGATGTGGAAGATTTTTTCAAAGAATGTGGAGAAATTCTTGATATTCGTCTGCATAGAGATCAGAGTGGGAGGTTAAATGGCATTGGACAAGTCGAGTTTGCAACAGAAGAAGCTGCAAAAAAAGCTCTTGACCTGAATAATACAGAATTGTTGAGACGTACCATCAAAGTTAATTTGGTTCAAGAAAAAGGTGAATATACCTACAGTAGAAGCAGCTGGAGCAACTCATTCCAGAAGTGTGAAAGAAATCAATCTCCTCTAACTATATTTGTGTCAGGTTTTGATCGTTCCCTTCCGGCAGCAAAGATAAAAGCTAGCCTAGAAGAGCATTTTGGTTCTTGTGGAGACATTATAAGGATATCAATTCCAAAATGTGATTCTGATGCTGTCAAGGGTATGAAGAAAGCTCTACTGCTAGATCAAATTGAGCTTGGAGGTTATCCCTTAAGAGTTGAAAAAGCAAAGCCTCGACATGATAACCAGGGTGTAGGCAATGACAGAGGTGGTGGTCATCATTTTGGTGGAAGGAATGGAACTGGCTATAGCAGCAGAGTGGGTTGGGGGAAGAGTGGTGGTGCTGGGTGGCATTCTCTTCATTATTCTGATGAAGGTGCAGAGGAAGAACCACTTTTAAGGATGGCGACTGAAGCAGCAGATGTTCGAAATTTTGGACCTTAGTATTATCACTCATCTTTGGTAATTAACGTTATGGAGGGTACACAGGTTGAAATCAGAAAATTGGGGATGTTAAACCCGAACTAAATAGTTACAAATAGTAAATTGATAAATCATTTGTTCTTTTTTTTTTTTTGTTTCAACTTTTGGTTCCTGTAAAAATCGAACCAAGCATTATAT 2349 0.398 MGNKSDTKAGDNAVPLPLIGKREGENEDEQQVSAKKHKRDEVSEEQRNKDEIVSDSSFSDSEPDKNPEAKKESLSKEEKKGKPASANCSISLESLADGSLEDEGNMDIDKGDNSEESDEETQKKMEVLSKMRATPNEQNYASNTIITRNLSFSVERADLETLFKECGEIVDIRLHTDFEGRFLGFGHVEFATAEAAQQEDILGFFWLWRSRQGGSHGSRCGDIVEDVNEIEDEGFETSPPVEEDSDVTDCEGLCRSRERGIEGLVERADLKALQLNNTELLKCRIKIGIARQKYKPTPNRSFHANFSNSSNTFQKGERSLPMKGSEISGDCKETEPKMLTTCKEQSATSKTIYAGNLSYSMKQADMEFFFKECGEIVDIRLHTSRGYGHVEFATTEAAQKALDLNNTLYLGRRIGVFIAQKKGEYISNRSNWSKSFYESEKTQPIRSTESSENCKQEIEGKTSKSPWESSKRLATLERQNAPSKIISVRNLSYSVLQTDVEDFFKECGEILDIRLHRDQSGRLNGIGQVEFATEEAAKKALDLNNTELLRRTIKVNLVQEKGEYTYSRSSWSNSFQKCERNQSPLTIFVSGFDRSLPAAKIKASLEEHFGSCGDIIRISIPKCDSDAVKGMKKALLLDQIELGGYPLRVEKAKPRHDNQGVGNDRGGGHHFGGRNGTGYSSRVGWGKSGGAGWHSLHYSDEGAEEEPLLRMATEAADVRNFGP 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03815 723 Gene3D - 428 568 IPR012677 -
Pste1g03815 723 Gene3D - 329 427 IPR012677 -
Pste1g03815 723 Gene3D - 109 326 IPR012677 -
Pste1g03815 723 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 350 421 IPR000504 GO:0003723
Pste1g03815 723 SUPERFAMILY RNA-binding domain, RBD 482 623 IPR035979 GO:0003676
Pste1g03815 723 MobiDBLite consensus disorder prediction 654 674 - -
Pste1g03815 723 MobiDBLite consensus disorder prediction 103 123 - -
Pste1g03815 723 MobiDBLite consensus disorder prediction 1 123 - -
Pste1g03815 723 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 198 IPR000504 GO:0003723
Pste1g03815 723 SUPERFAMILY RNA-binding domain, RBD 106 197 IPR035979 GO:0003676
Pste1g03815 723 SMART rrm1_1 586 650 IPR000504 GO:0003723
Pste1g03815 723 SMART rrm1_1 485 556 IPR000504 GO:0003723
Pste1g03815 723 SMART rrm1_1 351 417 IPR000504 GO:0003723
Pste1g03815 723 SMART rrm1_1 144 211 IPR000504 GO:0003723
Pste1g03815 723 Gene3D - 569 691 IPR012677 -
Pste1g03815 723 MobiDBLite consensus disorder prediction 21 83 - -
Pste1g03815 723 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 317 446 - -
Pste1g03815 723 MobiDBLite consensus disorder prediction 441 464 - -
Pste1g03815 723 SUPERFAMILY RNA-binding domain, RBD 344 431 IPR035979 GO:0003676
Pste1g03815 723 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 352 414 IPR000504 GO:0003723
Pste1g03815 723 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 486 554 IPR000504 GO:0003723
Pste1g03815 723 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 197 IPR000504 GO:0003723
Pste1g03815 723 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 484 560 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03815 Pste-Chr1 18936290 18961612 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03815 344 564 Eukaryotic Initiation Factors Gene Family AT1G34140 27.193 1.66e-09 58.5