LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g03799	ATGAATATGAATATCCAGGGGAAATTAACTAATGGACAACAAATAGCCGTCAAGAGACTTTCAAGCTTCTCAGGTCAAGGAAGGACAGAGTTCCTAAATGAAGTAAAACTAATTGCAAAACTTCAACACAGAAATCTTGTAAACCTTCTGGGTTGTTGCATTCATGGAGAAGAACGAATACTGGTTTATGAATGCTTGGCCAACAGCAGCCTAGACTACTTCATTTTTGATGACAACAAAGGAAAATTTCTAGAATGGCCTCAGAGGTTCCACATAATCTGTGGAATTGCTAGGGGGCTCACCTATCTGCATCAAGACTCTAGATTGAGGATTATTCATAGAGATTTGAAAGCAAGTAATGTCTTGCTTGATGAACATTTGAATCCAAAAATATCAGATTTTGGATTAGCCAGAACTTTTGGAGGGGACCAGATAGAAGGCAACACAAATAGAATAGTTGGAACTTACGGGTACATGGCACCTGAATACGCAGTTGATGGGTATTTTTCAGTGAAATCTGATGTATTTAGCTTTGGCATTTTAATGTTGGAGGTTATATGTGGCAAGAGAAATAAAGCATATTATTACACAGATACCACTCTTAATCTTGTTGGTCAGGCATGGACATTGTGGAAAGAGGATAAAGCTTTAGAATTGATTGACTCAAACCTGAGAGACTCATACGTTTTATCAGAAGTATTGCGTTGCATGCATGTTAGTCTCTTGTGCGTGCAGCAGCACCCAGATGATAGGCCTACAATGGAATCTGTGATTCTAATGTTGGGAAGTGAAATGCAATTGGTTGAGCCTAAAGAACCAGGTTTCATTTCAAAAAATGTTTCAAGTGAACTGGGTTTGCATACAAATCTGACGGATAGAAGTTTATCCAAGGAAATGACCATTTCCTTATTAGATCCACGTTGAAAATCAATTTGTGAGATAATTAAAAATATAAAGTAAATCATAAATTGCACTTTGTTATGTCTATCTTGGAAGGTGAGTTATTTTTTTAATCAACCACAATTTATTTGATAATGGGTACAAGGGTTACCAACCCTTTTGCAAGCATATTCTAAATTCTGCATAATAATGAAG	1095	0.3653	MNMNIQGKLTNGQQIAVKRLSSFSGQGRTEFLNEVKLIAKLQHRNLVNLLGCCIHGEERILVYECLANSSLDYFIFDDNKGKFLEWPQRFHIICGIARGLTYLHQDSRLRIIHRDLKASNVLLDEHLNPKISDFGLARTFGGDQIEGNTNRIVGTYGYMAPEYAVDGYFSVKSDVFSFGILMLEVICGKRNKAYYYTDTTLNLVGQAWTLWKEDKALELIDSNLRDSYVLSEVLRCMHVSLLCVQQHPDDRPTMESVILMLGSEMQLVEPKEPGFISKNVSSELGLHTNLTDRSLSKEMTISLLDPR	307

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g03799	307	Gene3D	Phosphorylase Kinase; domain 1	1	65	-	-
	Pste1g03799	307	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	111	123	IPR008271	GO:0004672\|GO:0006468
	Pste1g03799	307	FunFam	Uncharacterized protein	1	65	-	-
	Pste1g03799	307	Pfam	Protein tyrosine and serine/threonine kinase	10	259	IPR001245	GO:0004672\|GO:0006468
	Pste1g03799	307	PIRSF	TyrPK_CSF1-R	7	86	-	-
	Pste1g03799	307	PIRSF	TyrPK_CSF1-R	227	295	-	-
	Pste1g03799	307	PIRSF	TyrPK_CSF1-R	76	190	-	-
	Pste1g03799	307	SMART	serkin_6	3	268	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g03799	307	ProSiteProfiles	Protein kinase domain profile.	1	268	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g03799	307	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	66	269	-	-
	Pste1g03799	307	Gene3D	Transferase(Phosphotransferase) domain 1	66	272	-	-
	Pste1g03799	307	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	6	300	-	-
	Pste1g03799	307	SUPERFAMILY	Protein kinase-like (PK-like)	10	264	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g03799	Pste-Chr1	18830340	18831720	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g03799	6	275	Receptor kinase-like Gene Family	AT4G23230	59.410	2.24e-113	339

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pste1g03799		PK_Tyr_Ser-Thr	2.1e-44	CL0016