Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03780 CCTTCCTCTCTCGCCTCTTTCTCTCAGCAGGGTTTTACTTTTCAGCTTAAACCCGCGGCCATGGCGACGAGAGCAGCGGTGGCGGCCCCGCGCCTTTTGCGGCGGTTTTTCTGCACTAACTCCGCCTCTTCTTCTTTCCCCTTCGTTTCGACACCGCCTCCCGGCGCCGCCCCCACCCCCACGCGTCCCACGGCGGAGCCCAACACCAACCTCTTCGTCTCAGGTCTTAGCAAACGAACTACAACTGAAAGGCTTCGTGAAGAATTTGCAAAGTTTGGTGAAGTTGTCCATGCGAGGGTGGTGACTGATAGAGTCTCAGGCTACTCTAAGGGGTTTGGTTTTGTGCAATATGCTACAATAGACGAGGCTGCAAAGGGCATTGAAGGCATGGATGGGAAGTTTTTGGATGGTTGGGTTATATTTGCAGAGTATGCAAGACCAAGACCACCCCCAGGACAAAATGTAAATAACGGTCCTCCTCAGTTTGGCCGGCAGTGATTTCCGTTATTTATCTGAAACATTCTCAACTAGCAATTGCAAATCATAAATATTATTTACAAAGGCATACATGATTGGGTGGTCTTTAATGAACTATAAAAAGATATATTATTGTAATGAAAGGATAGCCTATGACATTGTTGTAATTCATGATTTGAATATTTTGTGGTTACGGTCATTCCAAAGTAGCTTCAGTTTTGTACTAGAGTATTGATGCCGTTGTCTGGACAACAAAAAATTATTATTTTCTACCATATTTAACATGCTGTCAGATTCTTTTTCTGAGA 785 0.4497 MATRAAVAAPRLLRRFFCTNSASSSFPFVSTPPPGAAPTPTRPTAEPNTNLFVSGLSKRTTTERLREEFAKFGEVVHARVVTDRVSGYSKGFGFVQYATIDEAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQNVNNGPPQFGRQ 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03780 145 MobiDBLite consensus disorder prediction 126 145 - -
Pste1g03780 145 FunFam RNA recognition motif-containing protein 28 139 - -
Pste1g03780 145 Gene3D - 24 136 IPR012677 -
Pste1g03780 145 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 117 IPR000504 GO:0003723
Pste1g03780 145 SMART rrm1_1 50 123 IPR000504 GO:0003723
Pste1g03780 145 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Pste1g03780 145 SUPERFAMILY RNA-binding domain, RBD 38 143 IPR035979 GO:0003676
Pste1g03780 145 MobiDBLite consensus disorder prediction 29 51 - -
Pste1g03780 145 PANTHER NUCLEOLAR PROTEIN 8 32 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03780 Pste-Chr1 18651214 18654191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03780 50 126 Eukaryotic Initiation Factors Gene Family AT2G23350 38.961 4.68e-11 57.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03780 1 18651214 18654191 Pste1g03780 1 18651214 18654191 ECH