Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03772 AAAGTACCTACAAGTTTTGCAAGAAAACACTGGGAAGGAATGTCAAATCCTGTGATTCTAAGTCTCCCAAATGGCACCAAACAGAAAGTTTATTGGATTAAACGTGATTGTGGTGTTTGGTTTTGCAATGGTTGGAAAGAATTTGCAAAATATTTGCGTTTGGATGTGTCACATATTGTGGTGTTTCGATATGAAGGAAACTCTTGCTTTAACGTGCTTGTTTTTGGGGAAAGTGCATTGGAAATAGAATACCCTTCAAGCAAGGGTAAAACTACTTATGAAGAAGAGGAAGAAATTCAAGATAGTGATTCTGATGCGGAATTTGTTGAAGAGCATACACCAATGGGGACTACTGATAAGCCAAAGTTTCCATCACCATATTCTACAACTATTAAGAGAAAAATCAGCTCAAATGAAAAAGAACTAGAACAAGATGATGAACCTATGCATTGGAAGAAGAAAACTGGAGTTTTCAAGAAGAGAATCAACCTCTTTCACAACAAAGTGAAGAGAATCTTCCACTCTGAGAATGAACATTTCATATGTCTAATCCAAAAGACATACACCGAGAGAGAACTTTTGATAATTCCAGTGGACTTTTCCAAATCATATCTGCACAAGGAAAATTGTAGGCTTTTTGTTGACAAAGGGAGAAGTTGGGATGTAGAGATAAAGGTGAATAACTATGGACAATTGACATTTTCCAATGGCTGGAGGAAATTTGTGAGGGACAACAATTTGAAAGTTGGTGATGTTTGTGCTTTTGAGCTGCACAATATTGAAGAATTTGCTTTCAAAGTTACTATTTATCCTTTTCAAGAGGACCCAAACACTCCCCTCCTCCAAGGTATAATTTATTTACTTATCCTAATCTCTTATTATCAGCCTTAA 891 0.3614 KVPTSFARKHWEGMSNPVILSLPNGTKQKVYWIKRDCGVWFCNGWKEFAKYLRLDVSHIVVFRYEGNSCFNVLVFGESALEIEYPSSKGKTTYEEEEEIQDSDSDAEFVEEHTPMGTTDKPKFPSPYSTTIKRKISSNEKELEQDDEPMHWKKKTGVFKKRINLFHNKVKRIFHSENEHFICLIQKTYTERELLIIPVDFSKSYLHKENCRLFVDKGRSWDVEIKVNNYGQLTFSNGWRKFVRDNNLKVGDVCAFELHNIEEFAFKVTIYPFQEDPNTPLLQGIIYLLILISYYQP 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03772 296 Pfam B3 DNA binding domain 182 270 IPR003340 GO:0003677
Pste1g03772 296 Pfam B3 DNA binding domain 2 74 IPR003340 GO:0003677
Pste1g03772 296 SUPERFAMILY DNA-binding pseudobarrel domain 173 270 IPR015300 -
Pste1g03772 296 ProSiteProfiles B3 DNA-binding domain profile. 179 273 IPR003340 GO:0003677
Pste1g03772 296 Gene3D - 161 274 IPR015300 -
Pste1g03772 296 CDD B3_DNA 194 271 IPR003340 GO:0003677
Pste1g03772 296 MobiDBLite consensus disorder prediction 87 106 - -
Pste1g03772 296 SUPERFAMILY DNA-binding pseudobarrel domain 2 77 IPR015300 -
Pste1g03772 296 Gene3D - 1 79 IPR015300 -
Pste1g03772 296 SMART B3_2 1 78 IPR003340 GO:0003677
Pste1g03772 296 SMART B3_2 180 273 IPR003340 GO:0003677
Pste1g03772 296 ProSiteProfiles B3 DNA-binding domain profile. 1 78 IPR003340 GO:0003677
Pste1g03772 296 CDD B3_DNA 2 75 IPR003340 GO:0003677
Pste1g03772 296 PANTHER B3 DOMAIN-CONTAINING 2 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03772 Pste-Chr1 18537385 18539288 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03772 1 270 B3 DNA Binding Superfamily AT3G18990 25.949 3.13e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste1g03772 B3 4.1e-16 CL0405