Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03749 ATGGGTCTTGGCAAAACAGTTCAGGCTATCACATATTTAACTTTGTTGAAACACTTGCACAATGATTCTGGTCCACATCTTATAGTATGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTGAAAAGATGGTGTCCATCCTTCTCTGTTCTTCTATATCATGGTGCTGGACGTGCAGCATACTTCAAGGAGTTGAATTCCCTGTCCAAGGCGGGGTTTTCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGTGCACAGCAGAAAGATGATCGCAAAATCCTGAAGCGGTGGAGGTGGAGCTGTGTGCTGATGGACGAGGCACATGCTTTGAAGGACAAGAATAGCTTTAGGTGGAAAAATCTAATGTCTGTTGCACGAAATGCGAACCAACGGTTGATGCTGACAGGGACACCACTTCAGAATGATCTACATTACCCAGCAGGATTCTTTAGTCTTAAACAAAATCTTTATGACTTGTCTCCACCTGTTGATTTTGCTAGCATTGATATGAATGTAGTTGCTGAAGCAAGGTTTGTTATGAATTTGTTGCAGGAGCTATGGTCACTGTTGGAGTTTATGATGCCTGATATTTTTGCTAGTGAAGATGTTGACCTGAAAAAGTTACTAAATGCAGAAGATAGAGATTTAATTGGTCGTATGAAGTCCATTTTAGGGCCCTTTATTTTGCGGCGATTGAAATCTGATGTGATGCAACAACTGGTTCCAAAAATACTGCAGGTTGAATATGTTATAATGGAAAGGCATCAGGAAACTGCTTACAAGGAAGCCATTGAAGAATATCGTGCTGTTTCACAAGCTCGTATAGCAAAATGTTCTGAGCTTAATTCTAAAAATGTTCTTGAAGTTCTTCCTCGACGACAGATAAATAACTATTTTGTCCAGTTTCGCAAGATTGCAAACCATCCCTTATTAATAAGGCGAATCTACAATGATGAGGATGTCATTCGTTTTGCTAGGAAGCTACATCCAATAGGTGCTTTTGGTTTTGAATGTACTTTGGAGAGAGTTATAGAGGAACTTAAAAATTACAATGACTTTTCTATTCATCGGGTAAATCTTCTCTCTCAGGATGATGCAGTTACTGACCACCTCTATCTTTGGCTTCCATTAATATGCTTATGTAGTTTCAGTCAAGCACAGAGCTCCGTTCTTCAAGCACCCATTTTCCTGACTGATCCTGAATTTTCTGGTGTTCCCCTTTCCCAACCTTTCCTTGATGTCCTGATCCATGATTACGTTGGCCTCCGCCTTGCTATGGCATTGCTTAATAATGATGAAAATGTGTTAAATTCAAGTAGTCAGTATGAATTTGGTGACTCTAACAATGTTTTAGGCACAACAAACAAGGAAAGCATCAAGCTTTTACTTCATTATGGTGTCAATGATAGAAAGGGGATCCTTCCAGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTAGCTGAACTTCTTCCTTCACTAAAGGAGGGTGGTCATCGAACCTTGATCTTTAGTCAATGGACCTCAATGCTTGACATATTGGAGTGGACTTTGGATGTCCTTGGATTGACCTATAAACGACTTGATGGAAGGTCAGAGCCCAATGCACTGGGTCACCCTTTATACATTAATGTTATGCATGCTTTATACATGGAGTGGTTGGGAGTGGCCTTGCCACAAAGGAGATGTGATGCAGAGGATGCTGGTGTGGGTAACATGGACGACAATGTTGTTCTCTACTTGGAAGAAACTGGTCTAAAATTGGCTGAAGAAACAATTGATGTAAGGCCAGAAATCATATCATGGCTAGAGATAGTGGTGAATAGAAGCGACAATAAAGATGACAGGAATAGAAGACCAAATAAGGGGCCACTGAAACATTTGACAGGCGGCATAATAGCCTTGAGGAGTACACAGGTAGCGGAGAGGCAAACGATAGTTGATACATTCAATAATGATACTTCAATATTTGCATGCTTACTTTCCACGAGAGCTGGTGGACAGGGTTTAAACTTGACTGGAGCTGATACAGTTGTAATTCATGACATGGATTTTAACCCCCAGATTGACAGACAAGCTGAAGATCGATGCCATCGAATTGGTCAAACAAAGCCTGTAACCATATATCGACTGGTGACAAAGGGAACAGTTGATGAGAATGTGTACGAGATTGCAAAAAGAAAACTAGTATTAGATGCTGCTGTTCTCGAGTCCATGGAGGAGATTAATGAAGGTGACATGCCCGAGAAGACCATGGGAGAGATATTATCTGCAATTTTATTGAGTTAAAATATAGGGAAAACACAGTTTAATATATAATCACTCCTTTCCTACAGTTCCAGTCTTGAATTATTCTGTTGATTTGGTAGAGATGAGGACTGGCCGCCCTACAAATTGGTAAGAATGCGGTACCAGTATTAATGTACATTAGTCTTAATGTTCACGTGTTGATGACAGTGAAATAATCTTTAGTTAGAATTCAATAGGAAAAATAGCATAAAAAGTCATGGTAGAGAGATTAGCAAATTTGTCGAACATTATTCCTGAAGCCTAATGAAGAAAGCCCATACCCTGCA 2603 0.4007 MGLGKTVQAITYLTLLKHLHNDSGPHLIVCPASVLENWERELKRWCPSFSVLLYHGAGRAAYFKELNSLSKAGFSPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHYPAGFFSLKQNLYDLSPPVDFASIDMNVVAEARFVMNLLQELWSLLEFMMPDIFASEDVDLKKLLNAEDRDLIGRMKSILGPFILRRLKSDVMQQLVPKILQVEYVIMERHQETAYKEAIEEYRAVSQARIAKCSELNSKNVLEVLPRRQINNYFVQFRKIANHPLLIRRIYNDEDVIRFARKLHPIGAFGFECTLERVIEELKNYNDFSIHRVNLLSQDDAVTDHLYLWLPLICLCSFSQAQSSVLQAPIFLTDPEFSGVPLSQPFLDVLIHDYVGLRLAMALLNNDENVLNSSSQYEFGDSNNVLGTTNKESIKLLLHYGVNDRKGILPDKHVMLSAKCRALAELLPSLKEGGHRTLIFSQWTSMLDILEWTLDVLGLTYKRLDGRSEPNALGHPLYINVMHALYMEWLGVALPQRRCDAEDAGVGNMDDNVVLYLEETGLKLAEETIDVRPEIISWLEIVVNRSDNKDDRNRRPNKGPLKHLTGGIIALRSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESMEEINEGDMPEKTMGEILSAILLS 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03749 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 241 765 IPR027417 -
Pste1g03749 771 Pfam SNF2-related domain 1 152 IPR000330 GO:0005524|GO:0140658
Pste1g03749 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 239 IPR027417 -
Pste1g03749 771 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 164 IPR014001 -
Pste1g03749 771 FunFam Transcription regulatory protein SNF2 218 248 - -
Pste1g03749 771 Pfam SNF2-related domain 188 319 IPR000330 GO:0005524|GO:0140658
Pste1g03749 771 Gene3D - 249 326 IPR027417 -
Pste1g03749 771 SMART helicmild6 628 710 IPR001650 -
Pste1g03749 771 SMART ultradead3 1 168 IPR014001 -
Pste1g03749 771 Gene3D - 1 162 IPR038718 -
Pste1g03749 771 Gene3D - 187 248 IPR038718 -
Pste1g03749 771 Pfam Helicase conserved C-terminal domain 647 710 IPR001650 -
Pste1g03749 771 CDD SF2_C_SNF 482 721 - -
Pste1g03749 771 Gene3D - 430 545 IPR027417 -
Pste1g03749 771 PANTHER SNF2/RAD54 HELICASE FAMILY 1 542 - -
Pste1g03749 771 CDD DEXHc_Snf 1 206 - -
Pste1g03749 771 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 596 768 IPR001650 -
Pste1g03749 771 Gene3D - 641 768 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03749 Pste-Chr1 18358880 18369667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03749 1 89 RAD5 or RAD16-like Gene Family AT1G05120 31.250 8.45e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste1g03749 SNF2_N 2.6e-28 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03749 1 18358880 18369667 Pste1g03749 1 18358880 18369667 ECH