LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g03747	AAACTTCCTCTTTCTTAACATCAAGCTCTCTCTTCCTTCTTTTTACTGTTAGCCTTTACTTTTTACCATTTTATGACACACGTTCTGCACATAGGAAAAAATTAAAAATTGTTTGTCACCATCAACATTTCATGGTCAACAACCCCAAAAGCCGTCCTTTTTGAGTTCCCTGTCTTCGATCCTGCAAGAAGCAAAGACCCTTTTCTTGAATCTTTATTTGGGTGCTCTGGCTTATGTTTGCATTTGCAGGGTGATTTAGTGATACTGATGCTTTTGCACCTATCCAACTTTTTTGTTTTTGTTTGGAGTTGTTTTCTGATTGATTCCTGTGGTGGGGTGTGGCTAGTCTTGATCTGATTAGATTAAAGGTGGAAGCTTTGGTGAGTGGCAAGGTTTTTTTGAAGTTTGTTTTTGTTTGATCTTGAAGTTTTGATTTTTGGTGTAAACACTTGGTTGCTCTTGCTGGATTTACTTGTGTAAGGTACTGAGAGTGGTATTTTGAGAAGGAATTGAAGTGGGTTGGAGGTGGATTGTGAAAAGAAGTTTTCTTTTTTTCTTGGGGAGGTTTTGGGGTTTAGTCCCTGGGTGAAATGAGAAGTATATCAAGCTCTTGGAATGGGAATTCAAAAACATATGGTTAATATAAAGGTTAGCTTTGGGGTTCTTTTGGTTCTTCTTCTTGTAGCAGCAGTCAGCCCTTTGGAAAAAAAGGAAACTGAAGATAATTTTGTTAGCGAGTTACTTGATCCTGCATCTGGCTTGTTTGATGAGCACACGGCAAAGGTCTTATGGAGATATTGTTGGGAAGATTTATTTCATTCAACACAAGATCTTGAGGATCATGATTTATGCCTCTCACAGGAATTGACTGGCAGCACCAATATAATCAGTTCAGATATTCAGCCATTAGCAGAGGGTGAAATCCAAAAATTTATCAATGCTTACTGTCCTCAATTCAAGGAGAACTTTCTTCACTGTTTGAGAAAAAATAATCGTCCATTACCTGTCTCAGGAAAAGAGGATGACTCCAATATTTGGCTTGTCAATGATATGGGATCCCTTTTTTACCAATCCAGTGTTCCTGAAAGAAATTTTGGTCGTATTTTGCTCCAGCACATATCAGAATCACCTAGTCCAGGCCCTGCAGTTGGATCACCTACACCGAGTTTAGCACCATCAGCTGAAACCAGTCTAGCACCATCATCAGAACTTAGTTTGGCCCCATCACCTCTTGCTCCAGCTCCTCTAGTTCCTAGACCTCTGCATCCTTCTTCACCAACACCATCATTTTTCCCAAAATTGACACCACCAGCAGCTTCTGAGTCTGAAATTTCTTCTCCTCCATCTTCTGACAATATTAACAAGCAGGAAGATAAAAATAGTAATAAAAAAACAGTTGTTCTTGCTGTAGTTATAACTGCATTGGTGACATTTATAGCTGCAGCACTGCTCTTTTTATGCTACCGTCGTTATCGTAAGACTGGCCATGTTAGACTAAATGATGATAGGCCTCTTCTCAGCTTAAGCATGGGTGACTACTCTGTTGGTCCTACTTCCAGTTATTCTTTTGGAAATTCAATAAAAGGGAATAAACCTGTGTTTCAGTCATCAAGTAATAATTTAGTGGACAATAAAAAGTACTCAGTGCAAGAAAATCAATCAATAGGAGCCCTTAATGCTGCTGCAGGATCACCATTTGAACTGAAACCTCCTCCTCGGCGGGTAGGAACCATCCCTTCCGGAATGCCTCCTTTAAAACCTCCTCCAGGTAGGCTAAACCCTCTTCCTCCTGAGCCACCTTCATTTAGGCCTTCGGGTAAAGCTGCTGTTGCTGCAGCTCCTCCTCCTGCCCCTCCAAAGCCTGCTATTAGTAACACTCCGCCATCAGCTCATGCCAAACCTGACCCGCCGCTACTGCAACCGCCAGCACTAGCTGGTGTCAGACCTGGTCCTCCTCCTCCACCACCTCCAGTGCCAGGTGGGGCAAGACCTGGTACTCCTCCTCCACCCCCAGCAGCAGCTGGTGCCAAACCTGGCCCTCCTCCACCACCACCCCCAGCACCAGCTGGAGCCAAACTTGGTCCCCGTCCGCCTCCACCTCCTATGAGTGGTGTGGCTCCTCCTCGACCTCCGCCACCGTTTGGCTCAAAGGTGGGAAGACCTTTAGCTAGTGGATCAAAGGCTAACGTTGAAGCTGGTGGAGAAGGTGAAGCTGATGCTCCCAAAGCCAAGCTAAAGCCCTTCTTCTGGGATAAGGTTCAAGCAAACCCTGATCAATCAATGGTTTGGAATCAAATCAAATCAGGATCATTCCAGTTTAATGAAGAGATGATAGAGACACTTTTTGGCTATAATGCTGTGGATAAGAACAATGGTCAAAGACAAAAGCAATCGTCCTCCCAAGACCCTTCACCTCAGTTTGTCCAGATCCTTGACAAAAAGAAAGCACAAAATTTATTGATTCTATTGCGAGCACTGAATGTGACTATGGAAGAAGTTTGTGATACACTTTATGAAGGACATGAGCTGCCGTCTGAATTCCTTCAAACCTTGCTGAAGATGGCACCAACATCAGAAGAAGAACTTAAGCTCAGACTTTTTAATGGTGATCTATCTCAACTTAGTCCTGCTGACAGTTTTCTGAAAGCCCTAGTTGACATTCCATTTGCATTCAAGCGAATGGAAGCTCTGCTTTTCATGGGCACATTTAAAGAGGAGCATGGAACTACTATGGAGTCTTTTGCCATTTTAGAGGTTGCTTGTAAGGAACTAAGAAATAGCCGACTATTTCTGAAGCTTCTTGAAGCAGTTCTCAAAACTGGTAACCGAATGAATGATGGGACGTTTCGTGGTGGTGCACAAGCATTTAAACTTGATACACTGCTGAAATTATCCGATGTAAAAGGAACAGATGGCAAGACTACACTGTTACATTTTGTTGTTCTAGAGATTATCCGTTCGGAGGGCATAAAAGCAATTAGAAAGGCAAAAGAGAGCCAGAGTTTGTCTAGTGATAAAGCTCAAGAAACAGAAGATCACTACCATGAAATTGGTCTTCAGGTGGTTTCACACTTGAGCAGTGAACTTGAGAATGTAAAAAAAGCGGCTGCTATAGATGCTGACAGCTTAACAGGAACCACTGCCAAACTTGGCCATGGTCTCATAAAAACACGAGACTTGGTAAACAAAAGCATGAAGAATGTGGAGGAAGATAGGGGATTTTGTGAGACAGTGAAAAGTTTTGTGCAGAATGCTGAGGCTGATGTTATGAAACTGCTGGAAGAGGAGAAGAAAATAATGGCTTTGGTGAAGAGTACTGGTGATTACTTTCATGGGAATGCTGGGAAGGATGAAGGCATAAGGTTATTCATAGTTGTTCGTGACTTCTTGATAATGCTGGATAAAGTATGCAAGGAGGTGAGAGATACAGGGAAGAAGTCAGCAAAAACACTAAAACAGGAGACTCCTCAGGGAACATCTTCTGAAACACGTCCACCACCTGATTATCGTCAGCGGCTGTTTCCAGCAATTGCTGAAAGGAGGATGGATGACATTAGCTCAGACGATGAGAGTCCATAAATTCAAATTGAAAGTGGTATTCAGACTGTTACCCTTACTAACTTGACATTATATAGCCTGGATAGTGTTGGGCCTGGCTTTTCTGGAACTAAAAAGCTAGTTCAATCTTAAAAAGGGTGGTTGCATATATGTTTCTTCATGAATGATGGAAGTGGCATGATTTTTACACTTCTCAAACTAAATGTCATATGTACAGTACAGACCTGGCTGGAGTTGTAATCAACCAATGAATGCAATTGCTTCTGATCATCATTGTTGTGTCCCCATTTGGGAATTTAGCTTCATAGTTTGAGACAGCCACTTCTTGAACTATAATTGTGTAGGGTCTTGATTTTTTTATTTTTTGTTTTTCATGATTCTTTATTCAATTAAACATGTTAGTGCATTTATTTATTGAAAGGGGCAGGATATATGCTACTTGTTTTCCTTTTTTCTTTTGAACATAGCATTATTATTTAGACATCTTTGAAAATCATTCATCTTAGACAATGCCGTTGGATTCAGTTAGGGGGAATATGTTAAAGCTAAAAC	4110	0.4158	MGIQKHMVNIKVSFGVLLVLLLVAAVSPLEKKETEDNFVSELLDPASGLFDEHTAKVLWRYCWEDLFHSTQDLEDHDLCLSQELTGSTNIISSDIQPLAEGEIQKFINAYCPQFKENFLHCLRKNNRPLPVSGKEDDSNIWLVNDMGSLFYQSSVPERNFGRILLQHISESPSPGPAVGSPTPSLAPSAETSLAPSSELSLAPSPLAPAPLVPRPLHPSSPTPSFFPKLTPPAASESEISSPPSSDNINKQEDKNSNKKTVVLAVVITALVTFIAAALLFLCYRRYRKTGHVRLNDDRPLLSLSMGDYSVGPTSSYSFGNSIKGNKPVFQSSSNNLVDNKKYSVQENQSIGALNAAAGSPFELKPPPRRVGTIPSGMPPLKPPPGRLNPLPPEPPSFRPSGKAAVAAAPPPAPPKPAISNTPPSAHAKPDPPLLQPPALAGVRPGPPPPPPPVPGGARPGTPPPPPAAAGAKPGPPPPPPPAPAGAKLGPRPPPPPMSGVAPPRPPPPFGSKVGRPLASGSKANVEAGGEGEADAPKAKLKPFFWDKVQANPDQSMVWNQIKSGSFQFNEEMIETLFGYNAVDKNNGQRQKQSSSQDPSPQFVQILDKKKAQNLLILLRALNVTMEEVCDTLYEGHELPSEFLQTLLKMAPTSEEELKLRLFNGDLSQLSPADSFLKALVDIPFAFKRMEALLFMGTFKEEHGTTMESFAILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGIKAIRKAKESQSLSSDKAQETEDHYHEIGLQVVSHLSSELENVKKAAAIDADSLTGTTAKLGHGLIKTRDLVNKSMKNVEEDRGFCETVKSFVQNAEADVMKLLEEEKKIMALVKSTGDYFHGNAGKDEGIRLFIVVRDFLIMLDKVCKEVRDTGKKSAKTLKQETPQGTSSETRPPPDYRQRLFPAIAERRMDDISSDDESP	987

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g03747	987	MobiDBLite	consensus disorder prediction	969	987	-	-
	Pste1g03747	987	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	476	945	-	-
	Pste1g03747	987	MobiDBLite	consensus disorder prediction	234	250	-	-
	Pste1g03747	987	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	530	954	IPR015425	-
	Pste1g03747	987	PANTHER	FORMIN-RELATED	172	976	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Pste1g03747	987	MobiDBLite	consensus disorder prediction	184	199	-	-
	Pste1g03747	987	Gene3D	Formin, FH2 domain	535	959	IPR042201	-
	Pste1g03747	987	MobiDBLite	consensus disorder prediction	357	534	-	-
	Pste1g03747	987	MobiDBLite	consensus disorder prediction	171	255	-	-
	Pste1g03747	987	MobiDBLite	consensus disorder prediction	406	512	-	-
	Pste1g03747	987	MobiDBLite	consensus disorder prediction	945	961	-	-
	Pste1g03747	987	SMART	it6_source	530	943	IPR015425	-
	Pste1g03747	987	MobiDBLite	consensus disorder prediction	206	228	-	-
	Pste1g03747	987	Pfam	Formin Homology 2 Domain	532	928	IPR015425	-
	Pste1g03747	987	MobiDBLite	consensus disorder prediction	939	987	-	-
	Pste1g03747	987	MobiDBLite	consensus disorder prediction	371	398	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g03747	Pste-Chr1	18335396	18343416	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g03747	234	978	FH2 protein (formin) Gene Family	AT5G54650	53.017	0.0	624

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste1g03747	1	18335396	18343416	Pste1g03747	1	18335396	18343416	ECH
	Pste3g02577	3	18707708	18711813	Pste1g03747	1	18335396	18343416	PCT