Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03745 ATGGCTTCTGCTTCCTCATCCACACCCTTCTTGGGAATCAGACAAGAAAATCAAACTCAGGTTACACAGCAGCACCAATCCTCCACTGCTGCTAATTCCTCAACTTCTACCACTCCAACCACAGTGCCTCAGAAGAAAAAGAGGAATCTACCGGGAACACCATGCAAGGTATCAAATTCTTTAACTACTACATTGGCTAAGCTTCTTTCTTATGTTTATCCAGATGCTGAGGTGATAGCACTATCTCCCAAGACTCTGATGGCGACAAACAGGTTTATATGTGAGGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTGCACAGAAGAGGACACAATCTGCCATGGAAGCTAAAGCAAAAGACTAACAAAGAGCAAAAGAGAAAGGTTTATCTGTGTCCCGAGCCCACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGGGATCTCACTGGGATTAAGAAACACTACTCTCGCAAACATGGCGAGAAGAAGTGGAAGTGTGATAAGTGCTCTAAGAAATATGCTGTTCAATCAGATTGGAAAGCACATTCCAAAACTTGTGGTACCAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCTAGGCGTGACAGTTTCATCACTCATAGAGCATTTTGTGATGCTCTAGCACACGAGAGTGCAAGACACCCTTCAAACCTGAACCCTTTGGGAACTCATATGTATGGCACAAACCACATGAGTCTAGGCCTTGGTGCACAACTTCAGAACCAAGCAGCCACTAACAGCTTATTGAGCCTTGGAAGTGCACCTAAGTTTGAGCACTTAATCTCACCAAATTTACACCACTCATCATCATTTGGAGTACAGTCACCACCCCAATCATCATCTTTCTTCATGACTGACCCAAACCAAGCATTTGAAGACATCCAGTCTCAGCAACAAGGACCCTTATTCTCAAGCAAGCAACTCCATGGTCTTATGCAACTCCCTGATCTTCAAGGATCCACCAATAACTCCACTTGTGCATCATCAGTTTCTGCATCAGCTAATAACAACAATAATCTCTTTAACCTCAGCTTTTTCCCTAACACCAATACCAATGGCAGCATGATGAATGATCAATTTAACAACATAAGTGGAGGTAATAACCAAGGAACAGCAACACTCTACAGTAATAATAGCCCTGTAAGTAACCAAGTTGGACCAGGCTTGTCTTCACTCTTCGGAAACTCATCAGTGCAACAAGATAATATGTCCCCTCACATGTCAGCCACTGCATTGCTTCAGAAAGCTGCTCAAATGGGATCAACCACAACCACCAATGGTTCTTCCTCTCTCCTAAGAGGAGCAGAAGAGTTAGGTATGAGATCAAGCATGGAAACTGAGCACAGTAACCATCTACGTGGCTTAATGAACTCTCTTGCAAACGGAAACAGTTCCATATTTGGCAATGTGAAAGGGAACGAAAACAACCTTGGTCAGTTTCACCACGTGGTGGAGGAGCCCAATAAGAAGATGTCACAAAATCTTGGTGTGTGCTTTGGTGGGTCTGATAAGTTGACCTTAGACTTTTTGGGTGTTGGAGGAATGGTGAGGAACATGAACAATAATAGTGGGTTTTCACAAAGAGACCAACATCACTCCTTGGGAACTATGAGCCCTTTGGATCCTAAATTGGAATCAGCACAAGCAAATCAACACTATGGAACCTCAACATTCTGATATGTTGTTGGATAAAAGGTAAAACTGAAACATACGTCATCTTTATGCATTCAAAGGCTTTAGTTTCTTCCCATCTACAAGAAGATATTTCTAGTGCACATTGAAAAAAATAAAAAACCAGAGTTGGGTAAATTTATTAGGCACAAAATATGTTTATTATTGTTATTTGTACTAGTAACTAGTTCTAAACATCTCTTCCTTTTCTTTTCCATGAAAAAAATTCCAATTGCTAATTGGTACGTTAGGGTTTCGTTTCTAAAATATGCAATCCATG 1987 0.4177 MASASSSTPFLGIRQENQTQVTQQHQSSTAANSSTSTTPTTVPQKKKRNLPGTPCKVSNSLTTTLAKLLSYVYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEQKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHESARHPSNLNPLGTHMYGTNHMSLGLGAQLQNQAATNSLLSLGSAPKFEHLISPNLHHSSSFGVQSPPQSSSFFMTDPNQAFEDIQSQQQGPLFSSKQLHGLMQLPDLQGSTNNSTCASSVSASANNNNNLFNLSFFPNTNTNGSMMNDQFNNISGGNNQGTATLYSNNSPVSNQVGPGLSSLFGNSSVQQDNMSPHMSATALLQKAAQMGSTTTTNGSSSLLRGAEELGMRSSMETEHSNHLRGLMNSLANGNSSIFGNVKGNENNLGQFHHVVEEPNKKMSQNLGVCFGGSDKLTLDFLGVGGMVRNMNNNSGFSQRDQHHSLGTMSPLDPKLESAQANQHYGTSTF 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03745 570 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Pste1g03745 570 SMART c2h2final6 168 188 IPR013087 -
Pste1g03745 570 SMART c2h2final6 133 163 IPR013087 -
Pste1g03745 570 SMART c2h2final6 92 114 IPR013087 -
Pste1g03745 570 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 536 IPR031140 -
Pste1g03745 570 FunFam protein indeterminate-domain 12-like 71 139 - -
Pste1g03745 570 FunFam protein indeterminate-domain 5, chloroplastic-like 146 225 - -
Pste1g03745 570 MobiDBLite consensus disorder prediction 1 56 - -
Pste1g03745 570 Pfam Zinc-finger double-stranded RNA-binding 92 114 IPR022755 -
Pste1g03745 570 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
Pste1g03745 570 MobiDBLite consensus disorder prediction 534 570 - -
Pste1g03745 570 Gene3D Classic Zinc Finger 146 225 - -
Pste1g03745 570 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Pste1g03745 570 Gene3D Classic Zinc Finger 75 142 - -
Pste1g03745 570 MobiDBLite consensus disorder prediction 555 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03745 Pste-Chr1 18315459 18319807 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03745 87 532 C2H2 Transcription Factor Family AT2G02080 47.881 2.88e-116 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste1g03745 zf-C2H2_jaz 3.5e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03745 1 18315459 18319807 Pste1g03745 1 18315459 18319807 ECH