Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03741 ATGGCAGCACCTTTTTCTGCAGCATCGCTCTTTGCAATCAGAGAAGAGGATCAGAATCAGATGAAGCAGCAGCATTCCTCAGCCCCATCATCATCAGCCACTCCTGCAGCACCACCACCCCAGCAGAAGAAAAGAAGAAACCAACCTGGAACACCAAGCAAGTTTATATGTGAGGTATGCAATAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTGCACAGAAGAGGACACAACTTGCCTTGGAAGCTAAAGCAGAAGACTACAAAAGAGCCAAAGAAAAAGGTTTATCTGTGTCCCGAGCCCACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGGGATCTCACTGGGATTAAGAAACACTACTCTCGCAAACATGGCGAGAAGAAGTGGAAGTGTGATAAGTGCTCTAAGAAATATGCTGTTCAATCAGATTGGAAAGCACATTCCAAAACTTGTGGCACCAGAGAGTATAGATGTGACTGTGGCACCCTCTTTTCCAGAAGAGACAGTTTCATCACTCACAGAGCCTTCTGTGATGCATTGGCACAAGAAAGTGTGAGAGAGCAACCCAACTTGAGCAGTGCCATTGGCAACCAACTATATGGAAACAGCAACATGTCCTTAGGCTTATCTCAAATGGGTCCACAAATCCCTTCCATTCATCATGACCAAAACGCTCAATCTGGTGAGCTATTGCGTTTTGGTGGTGCACCAAGGCCTGGTCAATTTGACCACATTCTCCCACCAAACATGGCCTCACCCTTCCGACCCTCCTCACACCAAACCATGCAAACCCCTCCCTTTTTCATGCAAGAAACAAACCAAAACTACCATGACTCAACAAAACCATTCCAAGGACTAATTCCATTGTCTGACCTAAACCACAACACCACCCCTTCTGGCTCCAACCTCTTCAACATTTCCTTTTTCTCCAAAACCAACAATGTTAACTTCTCTGAGGAACCACAGTTCAACACTGCTGAAGGGTCAAGTTTCTTCTCTGAAAGCACCATGATTGGCACTGATAATCATGATCACCACCACCAAACAAGCACCACCACTGCCCCTTCTCTCTTCAGCACCTCTCTCGAAAACAACACAACCCTTGCTCACATGTCGGCAACAGCACTGCTTCAAAAAGCAGCTCAAATCGGTTCTTCAAGCTCAACCCACACCAACACCAACACCAACACCAACACCAATCCCTCGCCTCTTCTCAGAACCCTAGCATCCAACAAATCTGACCACAGGTCCCTTAATGCTGCTGCAAACTACCACACCATCTTCAACAACAGTGTCCATGAAATGCTCAACATTCCAGGGTTTGAGGCCTATGATCATGGCATCAACAAGGAACCAAAGCTCAGCATTGGAACCTCTGATAGACTGACCAGGGACTTTCTCGGAGTTACACAACAACAAGGCTTCAACTTGAGTTCTTTGGAAACAGAGACAAATAATGCTGCGCCGTCAGGTCAAAGTTTCGGTACTGGAGGCAACTTTCACTGA 1512 0.4656 MAAPFSAASLFAIREEDQNQMKQQHSSAPSSSATPAAPPPQQKKRRNQPGTPSKFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKKKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESVREQPNLSSAIGNQLYGNSNMSLGLSQMGPQIPSIHHDQNAQSGELLRFGGAPRPGQFDHILPPNMASPFRPSSHQTMQTPPFFMQETNQNYHDSTKPFQGLIPLSDLNHNTTPSGSNLFNISFFSKTNNVNFSEEPQFNTAEGSSFFSESTMIGTDNHDHHHQTSTTTAPSLFSTSLENNTTLAHMSATALLQKAAQIGSSSSTHTNTNTNTNTNPSPLLRTLASNKSDHRSLNAAANYHTIFNNSVHEMLNIPGFEAYDHGINKEPKLSIGTSDRLTRDFLGVTQQQGFNLSSLETETNNAAPSGQSFGTGGNFH 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03741 503 Gene3D Classic Zinc Finger 109 189 - -
Pste1g03741 503 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Pste1g03741 503 Gene3D Classic Zinc Finger 55 100 - -
Pste1g03741 503 MobiDBLite consensus disorder prediction 1 52 - -
Pste1g03741 503 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 478 IPR031140 -
Pste1g03741 503 Pfam Zinc-finger double-stranded RNA-binding 54 77 IPR022755 -
Pste1g03741 503 MobiDBLite consensus disorder prediction 482 503 - -
Pste1g03741 503 SMART c2h2final6 96 126 IPR013087 -
Pste1g03741 503 SMART c2h2final6 131 151 IPR013087 -
Pste1g03741 503 SMART c2h2final6 55 77 IPR013087 -
Pste1g03741 503 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 77 IPR013087 -
Pste1g03741 503 FunFam protein indeterminate-domain 5, chloroplastic-like 109 188 - -
Pste1g03741 503 MobiDBLite consensus disorder prediction 384 405 - -
Pste1g03741 503 SUPERFAMILY beta-beta-alpha zinc fingers 55 151 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03741 Pste-Chr1 18294977 18299848 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03741 42 473 IDZ Gene Family AT2G02070 46.680 5.79e-109 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste1g03741 zf-C2H2_jaz 2.3e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03741 1 18294977 18299848 Pste1g03741 1 18294977 18299848 ECH