Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03740 ACATCTCTCATCTCTCATCTCTCATCTCATGCAGATTCCCCTTTTCTTTTCCCAGAAAATTATAACAATAATAACACCAATAAATTAATAATTAACAATAATATTAAAATAACCTCTCTTTCCCTTCTTTCTCTCCCAACTTCAAAACGTGCAAGCAAAACCCGCACCCGACACAGTACCTGTTTGTTTCCCAGCAAAACAAAAAAAAACGCGTTTTCTCTTGTGGGAAAAGAAAACCTCAATTTTCCCGGAAAACCTAAACCGCACAATGGTTTCCCGGGAAAACACCAATTGGCTCTTCGATTACGGTTTGATTGACGATATTTCCGTTTCCGACGCCACCTTCGCCAACGTCCCTTCCTCTGCATTCACATGGCCCCCTAACGCTCCTTCGGATGTCGGTGCTGAAATTGATGGCTCGTTGGGGGATTCTGATGGTCTCAAAGAGTCTGGCTCAAAGAAGAGGGTTAGATCTGAGTCATGCGCATCTTCTAGCTCCAAGGCATGTCGGGAGAAGTTGCGAAGAGACAGGCTTAATGACAAGTTTGTTGAATTGGGCTCCATTTTGGAGCCTGGAAGGCCCACCAAAACGGATAAGGCTGCTATTCTGATTGATGCTGTCCGAATGGTGACACAATTACGTGGTGAAGCCCAGAAGTTGAAAGACTCTAATCAGGGTCTTCAAGAAAGGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGCGATGAGAAACAGAGGCTCAAGGCAGAGAAGGATAAGTTAGAGCAGCAGCTGAAATCTTTGAATGCACAACCTAGTTTCATGCCTCCTCCTGCCGCAATCCCGGCTGCATTTGCGGCCCAAGGTCAAGCCCATGGCAACAAGTTGGTACCTTTTATTAGTTATCCAGGAGTTGCAATGTGGCAATTCATGCCACCTGCTGCAGTGGATACCTCACAGGATCATGTTCTCCGTCCACCAGTTGCCTAAGCTGGTACTGTACAATTCTCTGGGCTTGCATTTTTGCCCAAAGTTGTATCCGTTTTACCAATACCTTCCTGGCTTTATTAGTTCTCTTCTAAGTATTCTAACTGGACCCAGTGGTGACTTCTTACTGTATTTGGCATATGATACTTTTATGATTAATGCTGGTATTTGCATGTAAATGTTAATAAGTTTGTCTGGCTCCCTTTGTCTCTGTTTTAATAGTTGCTACTGGGTTCTAAAGATAATCAAATGTTAGGTTGACAGTTTCATTATTTCAGTTTAGGCTTTGCAAATTAAGAAAGAGGGCATTCTTTCTAGTATAGATATGTTTTTAACAATCCAGGAAACAATAGAGCTAATGGTGCTTTAGTTTTAAATTTCGTGCAGCCATGTTTCCC 1368 0.4247 MVSRENTNWLFDYGLIDDISVSDATFANVPSSAFTWPPNAPSDVGAEIDGSLGDSDGLKESGSKKRVRSESCASSSSKACREKLRRDRLNDKFVELGSILEPGRPTKTDKAAILIDAVRMVTQLRGEAQKLKDSNQGLQERIKELKAEKNELRDEKQRLKAEKDKLEQQLKSLNAQPSFMPPPAAIPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03740 234 MobiDBLite consensus disorder prediction 36 81 - -
Pste1g03740 234 Pfam Helix-loop-helix DNA-binding domain 76 124 IPR011598 GO:0046983
Pste1g03740 234 Gene3D - 62 122 IPR036638 GO:0046983
Pste1g03740 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 148 IPR036638 GO:0046983
Pste1g03740 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 124 IPR011598 GO:0046983
Pste1g03740 234 PANTHER BHLH TRANSCRIPTION FACTOR 3 234 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Pste1g03740 234 Coils Coil 121 176 - -
Pste1g03740 234 CDD bHLH_AtILR3_like 81 153 - -
Pste1g03740 234 SMART finulus 79 130 IPR011598 GO:0046983
Pste1g03740 234 Gene3D arf6 gtpase in complex with a specific effector, jip4 123 177 - -
Pste1g03740 234 FunFam Transcription factor bHLH34 64 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03740 Pste-Chr1 18294176 18297797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03740 1 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 69.583 1.25e-111 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste1g03740 HLH 2.8e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03740 1 18294176 18297797 Pste1g03740 1 18294176 18297797 ECH
Pste3g02583 3 18762813 18765347 Pste1g03740 1 18294176 18297797 PCT