Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03729 GAAAACCACACCACTCGTACGGAACCCCTCATGTGGGGACGGCCAAACGAACCCTCTTGGATTCTTCTACAGTCGCCCTCTTCCACTCCCAAAACCACCCTCCCAATTCACTTTATTTACCACCCATGCCACTCCCACCGCAACAAAGACTTGTTTCACACCCCTCGCAACTCGCAACTCGCAACTCGCAACTCGCAAGAAACAAACCTAAAAGCCCCTCTCAGATCTGAGTTCCTCAACTTTAAGATTTCCCTTCCTTCTCTCATGGATTCTTATTCCTCTTTTCAATTCAGGATTTGATTTTGGAAATCGAACATCCTTTTCTTCTTCTTTTTTTTTTTCTATTTTTGGTTGAATTTCTTTTTGGGAAAATGGAAAAGGTGGCGGCGCCTCCGATTGTGATGCAGCGGAAGCGCGATCTGTCGTACGGCGTGGTTTCGGCGGGTCCGAACGAGAGCTGGAAGTGGGAGTGGGACAGCGTGAGATTCGCGGGGAAAGCTCCATCTCCAAACGAGGACGTTGTTTTCGAGGAAGAGAGTGTGCAGTTAAACCTGGGTGGAAGAATGAACCCTAGCAACAAGAGGGTGCGGTCCGGTTCGCCCGGAACGCCGTCGTATCCCATGTGTCAGGTCGATAACTGCAGAGAGGATCTCTCCAAGGCCAAGGACTATCACCGGAGGCACAAAGTCTGTGAGGCTCATAGCAAAGCCACCAAGGCTCTTCTCGCCAATCAAATGCAAAGGTTTTGCCAGCAGTGCAGTAGGTTTCACCCGCTCTCCGAGTTTGACGAAGGCAAACGTAGCTGTCGCCGGAGACTCGCCGGTCACAACCGCCGCCGCCGGAAGACGCAGCCCGAGGATGTTACTTCCGCCTCGCCCGCTCCCGCCGCTGCCAATTTGGAAATCTTCAACTTGTTGACTGCTATCGCCGGGGCTTCGCAGGGAAAATTTGAGGAAAGAAGGTCACAAGTTCCGGATAGAGAGCAGCTTGTTCAGATTCTCAATAGGATACCTTTGCCTGCAGATCTTGCAACTAAGTTGCTGGATGCTGGTAATGTCAGTGGGAAAAAGGATCATGTGCAATTGCAGACACCATCTTCCTATCATCGTGATGACCAACTGAACCACACCCCAGCTGCCCCATTAACTATGGATTTGCTTGCTGTTCTTTCCACCACCCTGTCTGGGTCTGGCCCTGAGGTCAATACATCACCTTCTCAAAATCGTAGCTGCAGTAGTGATGGTGGCAGTGACAAGTCTAGGAGTAGCGCTGACCAAACGAGACAGCAGCAATTCTTTTCGGTTGGTGGAGAAAGAAGCAGTAGCAGTTCCCAGTCTCCTGTTGAAGATTCAGACTGCCAGGAGGATGTTCGCATTAATTTACCGCTGCAACTCTTCAGCTCCTCTCCGGAAGATGACAGCCTCCCTAAACTAGAATCTTTGAGAAAGTATTTCTCGTCTGACAGTAGTAACCCTGCCGAAGAGAGGTCGCCATCATCTTCTCCTCCTGTTGTGGAGATGCAGTTTGATTTGCAGGGTGGGGTTAGAGGTCTGAAGCCAGAGAGCATATCCTCTGGAAGAGCATTTAATGCAAATAAGGAAGCTAACAGTTGTAATATATCTCTTGATCTATTTAAAGGGTCAAATAACAGGATCCAACAACCTATTTCTATTCAAAGTGTTCCATTTCAAGCTGGGTATACATCTTCGGGCTCAGATCATTCACCTCCCAGTTTGAATTCAGATGCTCAGGATCGCACTGGTAGAATAATGTTTAAACTATTTGACAAGCATCCCAGCCATTTCCCAGGAACACTGCGAGCACAGATTTACAATTGGCTTTCTAATAGGCCATCTGACATGGAGAGCTACATACGACCTGGTTGTGTTGTCCTAACAATTTATGCTTCAATGTCTTCTGCTGCATGGGAGAAACTAGAAGAAAACTTCCTCCATCATGTTAGTACTTTAATTCAAAATTCAGAATCTGACTTTTGGAGAAATGGAAGGTTTCTGGTTCATTCTGGCAGTCAGTTAGCTTCACACAAAGATGGGAAGATACGCATATGCAAACCATGGAGAACATGGAAGTCACCAGAGTTGATATCCATGTCCCCTTTGGCAATTGTTGGTGGACAGGAAACCTCTATTTCATTGAAGGGTAGAAACCTGTCAACTCCTGGCACGAAGATTCACTGTACAGGTACTGGCTCTTACACATCGGCAGAAGTTATAGGATCTGCATATCCTGGTGTTACGTATGATAAGATAAAGTTAATTGGTTTTAAAGTTCAGGATGAATCACCTGTTGTTCTTGGTCGATGTTTTATTGAGGTTGAGAATGGTTTCAAGGGTAACAGCTTCCCAGTGATAATAGCTAACGAGACCATTTGCAAGGAATTGAGACCACTAGAATCCGAATTTGATGAGGAAGAAAAAATATGTGATGCCATTTCAGAGGAGCATGAACATCATTTTGGAAGGCCAAGATCAAGGGAGGAGGCTTTGCACTTTTTGAATGAACTTGGCTGGCTGTTCCAAAGAGAAAGATTCTCATATGTACATGAGGTTTCATATTATTCGCTTGACAGGTTCAAATTTGTACTCACATTTGCTGCGGAAAGAAACTGTTGCATGTTACTCAAAACCCTTCTGGATGTGCTGGTTGATAAGCACTTGCAAGGAGAATGGTTGTCATCGGGGTCTGTGGAGATGCTGAATGCAATCCAACTATTAAATAGAGCAGTGAAAAGAAAGTATGTAGGCATGGTTGATTTGCTCATCCACTATTCTATACTGAGCAAAAATGGTACGTCCAGGAAATATATATTTCCACCGAATCTTGAGGGTCCTGGTGGTATTACACCCTTGCACTTGGCAGCATGCACATCAGGTTCTGAGAGTGTAGTTGATTCTTTGACAAATGACCCACAGGAGATGGCAGTGGTACCGGAGATTTTGCATTTTGGACCTCAAATTGGGTTGAAATGCTGGGAATCCCTTGTGGATGCAAATGGCCAGACTCCTCATGCCTATGCCAAGATGAGGAATAATGCCTCTTATAATGTGCTGGTCACCCGTAAACTTGCTGAAAGACAAAGGGGTGAAATCTTGGTAAAAATTGAGAATGAGATGCAGCAATCGACACTGGGAGTAGAGCTTAAACAAAAGCTAAATAACCTAGTTAAACGAGGTCAGAGTTCTTGTGCCAAGTGTGCATTTGCAGAAATTCACTACAACAGAGGAGTTCCAGGTTCACAGGGTTTGCTTCACCGCCCCTTTATTTATTCAATGCTAGCTGTTGCAGCTGTTTGTGTATGTGTTTGTGTGTTCTTCCGAGGACGCCCTTTTGTCGGCTCAGTTGCTCCCTTCAGTTGGGAAAATATGGATTATGGCACAATGTAATACTATTGGCACAGCAGATTCGGACAAAGGGAATGGAAGGCATAATAAACCATGTGGGAAACCTAATTGCCTTTTTCCCCTAACATGACAAAACTGCCTCTTGGAAAATACGGGGTATTTTGTGACAAGAGCCTAATGTAAACATATCATCATGCGGTGACGTAGAGTTGTGGAGATATTTGGCAGATCTGTGAGAAACAACAAAGTAGGGCTGCCTTGTGTATAGATTCTGACCTGAATGCTGCATATTTTCTTTAAGGCCCGAGTTTTCAAGGATATGACAAGCTATACCTGAATGTTTATTAATTGGTGTTGGATGTTCAGAGTTAGAGAAATCTCAAGCTTTATTTGGCCAAATAAAACTTGACATCCCAATTTAAGTTGGATTTGTATGTTAAATTGTGGCCACAAGCTCAGACAATTATGAAAGCAGTGAGCGTTCTGAATAAAGAGAACTGTGGTGGGTAAATGTTGGTTATTGTTGGTGAGGAAGTCAATACAAGGGTTCGTTTCCCCTCCTTTCCAACGGTGAACCAATAAAAGTTCTTTGCTTTATTTTTCCCTTTAATTATTTTAAGTCAAAAATTACAAATCCAAGGTATTCTGATGCTTAAGTATCGATACTGTAAAGTTTGATTTGAGGTTACTGATCATAGGTCTGACCATATTATATGATTAAAAATTGTAATATATGTCAAGTTGTATCTAATTTAATTCACGTTTCAGATTCGTTTTTTTCTTGTTCCCTGAGATACAGATTGTTTGAGTCATCATGCAGATATCTATTTTTGATGTA 4200 0.4388 MEKVAAPPIVMQRKRDLSYGVVSAGPNESWKWEWDSVRFAGKAPSPNEDVVFEEESVQLNLGGRMNPSNKRVRSGSPGTPSYPMCQVDNCREDLSKAKDYHRRHKVCEAHSKATKALLANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSASPAPAAANLEIFNLLTAIAGASQGKFEERRSQVPDREQLVQILNRIPLPADLATKLLDAGNVSGKKDHVQLQTPSSYHRDDQLNHTPAAPLTMDLLAVLSTTLSGSGPEVNTSPSQNRSCSSDGGSDKSRSSADQTRQQQFFSVGGERSSSSSQSPVEDSDCQEDVRINLPLQLFSSSPEDDSLPKLESLRKYFSSDSSNPAEERSPSSSPPVVEMQFDLQGGVRGLKPESISSGRAFNANKEANSCNISLDLFKGSNNRIQQPISIQSVPFQAGYTSSGSDHSPPSLNSDAQDRTGRIMFKLFDKHPSHFPGTLRAQIYNWLSNRPSDMESYIRPGCVVLTIYASMSSAAWEKLEENFLHHVSTLIQNSESDFWRNGRFLVHSGSQLASHKDGKIRICKPWRTWKSPELISMSPLAIVGGQETSISLKGRNLSTPGTKIHCTGTGSYTSAEVIGSAYPGVTYDKIKLIGFKVQDESPVVLGRCFIEVENGFKGNSFPVIIANETICKELRPLESEFDEEEKICDAISEEHEHHFGRPRSREEALHFLNELGWLFQRERFSYVHEVSYYSLDRFKFVLTFAAERNCCMLLKTLLDVLVDKHLQGEWLSSGSVEMLNAIQLLNRAVKRKYVGMVDLLIHYSILSKNGTSRKYIFPPNLEGPGGITPLHLAACTSGSESVVDSLTNDPQEMAVVPEILHFGPQIGLKCWESLVDANGQTPHAYAKMRNNASYNVLVTRKLAERQRGEILVKIENEMQQSTLGVELKQKLNNLVKRGQSSCAKCAFAEIHYNRGVPGSQGLLHRPFIYSMLAVAAVCVCVCVFFRGRPFVGSVAPFSWENMDYGTM 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03729 1010 FunFam Squamosa promoter-binding-like protein 14 77 146 - -
Pste1g03729 1010 Gene3D - 76 146 IPR036893 GO:0003677|GO:0005634
Pste1g03729 1010 SUPERFAMILY SBT domain 83 163 IPR036893 GO:0003677|GO:0005634
Pste1g03729 1010 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 28 791 IPR044817 GO:0003677
Pste1g03729 1010 MobiDBLite consensus disorder prediction 61 80 - -
Pste1g03729 1010 MobiDBLite consensus disorder prediction 271 330 - -
Pste1g03729 1010 MobiDBLite consensus disorder prediction 233 249 - -
Pste1g03729 1010 ProSiteProfiles Zinc finger SBP-type profile. 82 159 IPR004333 GO:0003677
Pste1g03729 1010 MobiDBLite consensus disorder prediction 271 326 - -
Pste1g03729 1010 MobiDBLite consensus disorder prediction 232 253 - -
Pste1g03729 1010 Pfam SBP domain 85 158 IPR004333 GO:0003677
Pste1g03729 1010 Gene3D - 741 947 IPR036770 -
Pste1g03729 1010 MobiDBLite consensus disorder prediction 149 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03729 Pste-Chr1 18178695 18184635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03729 3 1010 SBP-box Gene Family AT1G20980 51.640 0.0 918
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pste1g03729 SBP 1.6e-29 No_clan