Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03703 ATAGAACAACTTCACTTCTCAATTCTCATGCTGTGTGTCAGAATACTGCACATATATTCCATACTAATCCCAATCCAATCATTCCCTCTCTTCTCGCCATTTCACTCACTCAAAACCAAAGCCTACCCCAAATCAAGAACAACAAAGTGTGTGTTGCTTGGGATAGCTTTAATCTCAACACCAACCTCCATTGAAGAAAAAAAAAACACCTTTATTACTTTGGAATTCTTGTCTTGGAAAACTATAAACTTTAGTTCATTAGGTCAAAAATTATTTTTTTTTTTCCTGAAAATTTTGGTTTTTCAGTCATATTTTTCTCCACACCACCATGGCTACAACCATAACAGAGCAAGAAGTCTCGTCACGTGCCACGCACGTGCCCGACTTCACGACCACAACCTCAGACGAGGACACGGAGGAGGACGAGGAGGGAGAACAAATACACGACGAGACCGATCGTTGCGGCGGAGGGTGGGGGCTAGCGGCGGCGTGCGGAGGAGCGCGGCGGAACGGTGGAGGGGCTTTGGGGAGGGTGCTGGACCCGAGGGCGAAGTGGGTCCAGGAATGGAACAGGGTGTTCCTGCTAGTGTGCGCCGCGGGGCTCTTTGTCGACCCTCTATTCTTCTACGCGCTCTCCGTTAGTGACTCGTGCATGTGCGTCTTTATTGACGGCTGGCTCGCCGTTAGCGTGACGGTGCTGCGGTGCATGACGGACGCGCTGCACGTGTGGAACATGGTGTTGAGAATGAAGATGGCCAAACGCACGTTTGGCTTGGGCGCCTCCGCCGCCTCGGCCGGAGCCTCCACCGGACTCAGAGACACGCGGCCGCGCTCCGTCGCGCTTGGGTATCTCAAGTCACGGACCGGATTCTTTTTTGACTTGTTCGTTATTCTTCCTTTACCTCAGATTTTGCTTTGGGTGGCAATCCCCTCATTGTTGGAGAAAGGTTCAGTGACGCTAGTGATGACAGTGTTCTTAATTATATTTCTATTCCAATACCTTCCCAAAATTTATCATTCTGTTTGCCATCTGCGACGCACACAAAACCTCTCTGGCTACATTTTTGGAACTGTTTGGTGGGGAATCGCCCTTAACATGATCGCCTATTTTGTTGCTTCCCATGCAGCAGGAGCGTGTTGGTACTTACTAGGGATCCAAAGAGCAGCCAAGTGTCTAAAAGTTGAGTGTGGAAAAACAAGTGGCTGTGGCCCGAAAATTCTCTCATGTCAAACACCAATATACTATGGAAGCAACAATTTGATAGTTAGGGATAGGGCAAGGTTGGCATGGGCAGAGAACAGGCAAGTGAGGCACACGTGCTTAAGTGGTCCTGATAACTTCTATGGAGCTTATAGATGGACTGTTCAGCTTGTCACTAATGATAATCGATTAGAAAAGATACTCTTCCCTATCTTCTGGGGCCTAATGACTCTCAGCACTTTCGGAAACCTAGAGAGTACAACTGAATGGCTAGAAGTAGTTTTCAACATCATTGTGCTGACCAGTGGCCTTCTCCTTGTCACTATGTTAATCGGAAACATCAAGGTATTTTTGCATGCAACAACCTCAAAGAAGCAAGCAATGCAATTGAAGATGAGGAACATTGAATGGTGGATGAGGAAACGACGATTGCCACAAGGGTTTAGGCAACGTGTGCGTAACTATGAGAGGCAACGTTGGGCAGCTATGCGTGGGGTTGATGAATTTGAAATGACCAAAAACCTCCCTGAGGGATTAAGAAGAGACATCAAGTACCACCTTTGTCTAGACTTGGTGAGACAGGTACCTTTGTTTCAGCACATGGACGATCTGGTTCTAGAGAACATCTGTGACCGTGTGAAGTCTCTTATATTCACAAAGGGAGAAATAATAGCTAGAGAAGGAGACCCAGTTCAGAGAATGCTATTTGTAGTAAGGGGTCACCTTCAAAGTAGCCAAGTCCTAAGAGATGGTGTGAAGAGTTGCTGCATGTTAGGGCCAGGAAACTTCAGTGGTGACGAGCTCCTTTCATGGTGTTTAAGGAGACCCTTCATAGAACGCCTTCCACCATCATCATTCACACTCATTACATTGGAAACCACAGAGGCATTCGGACTTGATGCTGAGGATGTGAAGTATGTGACACAACATTTCAGGTACACGTTTGTGAAGGAAAAGGTGAAGAGAAGTGCAAGATATTACTCACCAGGTTGGAGAACTTGGGCTTCTGTGGCCATTCAATTGGCATGGAGGAGGTACAAGCATAGGTTGACTTTGACTTCTTTGTCTTTTATAAGACCTAGGAGGCCATTGTCAAGGTCTTCTTCTATGGGAGAGGATAGGCTTCGCCTCTACACGGCTTTGTTAACCTCCCCAAAGCCTAATCAAGATGATTTTGACTTTTGAAATCATGTTGTGGATGTGGCATGCATGTGCATGGGTGTGGAATTTTATTGTTTGATTCATCTTATAGAAGAAAGTACAGAAAAATGCGTGCATGTTTTATGCAATATTGTGTTCATTATCATTAGAAGAAATTATTCATTTGATTTCTGTACAATGCTACAAGTTTTATCTTTTCCTCCCAATACTTAAAA 2577 0.456 MATTITEQEVSSRATHVPDFTTTTSDEDTEEDEEGEQIHDETDRCGGGWGLAAACGGARRNGGGALGRVLDPRAKWVQEWNRVFLLVCAAGLFVDPLFFYALSVSDSCMCVFIDGWLAVSVTVLRCMTDALHVWNMVLRMKMAKRTFGLGASAASAGASTGLRDTRPRSVALGYLKSRTGFFFDLFVILPLPQILLWVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKVECGKTSGCGPKILSCQTPIYYGSNNLIVRDRARLAWAENRQVRHTCLSGPDNFYGAYRWTVQLVTNDNRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDEFEMTKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEIIAREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSFTLITLETTEAFGLDAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWASVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRSSSMGEDRLRLYTALLTSPKPNQDDFDF 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03703 685 FunFam Cyclic nucleotide-gated ion channel 1 415 479 - -
Pste1g03703 685 MobiDBLite consensus disorder prediction 1 22 - -
Pste1g03703 685 SUPERFAMILY Voltage-gated potassium channels 72 409 - -
Pste1g03703 685 MobiDBLite consensus disorder prediction 1 44 - -
Pste1g03703 685 Gene3D Jelly Rolls 486 604 IPR014710 -
Pste1g03703 685 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 43 650 - -
Pste1g03703 685 Gene3D Helix hairpin bin 413 479 - -
Pste1g03703 685 SUPERFAMILY cAMP-binding domain-like 414 602 IPR018490 -
Pste1g03703 685 CDD CAP_ED 488 594 IPR000595 -
Pste1g03703 685 Pfam Cyclic nucleotide-binding domain 509 596 IPR000595 -
Pste1g03703 685 ProSiteProfiles cAMP/cGMP binding motif profile. 488 598 IPR000595 -
Pste1g03703 685 MobiDBLite consensus disorder prediction 24 38 - -
Pste1g03703 685 FunFam cyclic nucleotide-gated ion channel 4 486 604 - -
Pste1g03703 685 Pfam Ion transport protein 80 405 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03703 Pste-Chr1 17992852 18004182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03703 51 684 Ion Channels AT5G54250 77.570 0.0 1010