Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03654 TGTTTGACTCAAAAGCAGGGAAGGGTGGAGAAGAAGGTGAAGGGGCTAGTAGATCTGAGTGTGAAGCAAAAATCTTCTCGAAGTTTTCATCTTTCAATTAAAGGGTCCCATAAGAATGCTCTGAACCTTCTTCTTTTCTTACTCCCCAATCATTCTCACACAATGCCTCGCGCTTGCTTCCAGAAGCTTGTTCTCCCCCCCACTCTCCAATCCAGACAATTGAGGATTCCGGATAATTTTCTTAGGAAATATGGGACCCAGCTTTCTACAGTTGCTACCCTAACTGTTCCTGATGGAAGTGTTTGGCGTATAGGATTGAAGAAAGCAGATAACAGAATTTGGTTTGTTGATGGTTGGCAAGATTTTGTTCAACGCTACTCAATTGGTGTTGGATACTTTTTGGTGTTCATGTATGAAGGGAATTCATCCTTCATTGTTCATATTTTTAATTTGACTACCTCTGAGGTAAACTATCAATCGGCCATGAGAAACCACAATGAAGGGCCTTGCTTTGCCAATTATCATCATATATTTGATGATATGGAAGATGTAGATTCATTTGATTTTTCAGATTTGTCACCTCCATACCTTTCTTCTGGTGCATTGCAAAACAAGGGTTTTACTGGATCTGTTGATCAACTGACACCTGGGAAGAGTCATACTCCAGCTTTGCAAAATTTGTTCAATGGTGGATCAAAACTCAATCGTGTTAACTGGGGTGATGGTGGGAATGCTTTTTCTTCCAAGGGTGCCAATTCACAAGGCAATCAGTCAACTAGAGACATAGGTGTTCAGTTTAATGCTGTTGAGTTTAAAAGGTCCACTGATGAATTGAAATTGCGTTATTCTAATGAGGTAGCGGTTAATAAAACTGCTAAAAAGAAGCGGAAATCAGAGACCCATGGTGAGGAACCCTCTGGAGAAAATGAAGAGGAGGTAGAAATGCGCTATAGGTTTTATGAAAGTGCATCTGCAAGGAAAAGAACTGTGACAGCAGAAGAAAGAGAAAGGGCGATTAATGCATCCAAAGCATTTGAACCAACTAATCCTTTCTGTCGAGTTGTCTTGCGACCCTCTTATTTATATAGAGGATGCATAATGTATTTGCCTTCCTGCTTTGCTGAGAAGAATCTGAATGGGGTGTCTGGATTCATTAAACTTCAGTTGTCCAATGGTAGACAGTGGTCAGTTCGCTGCCTCTATAGGGGAGGTCGAGCTAAGTTAAGTCAAGGATGGTTTGAATTCACAGTGGAGAATAATCTGGGGGAAGGTGATGTTTGTGTGTTTGAGCTCCTTAGAATGAAGGAAGTTGTGCTGCAAGTTACGGTGTTCCGTGTTACCGAGGATGCAGGGTTGTTGAACTCTCCTGAACTGCTGCAGCAGAGCCAAAATATGAGCCACACCAAACTCTTGAACCCTCACTTGCAGCATCGTGTTAGTACAACCAAATTAATTAGAAATTAGCAGGAACAGTTAATTCCTGATAACCAAATTGTGATAATTAGACCGTGCTTCTGAGTGATCTGTTGTTCATCTAATTTCTTCACTTGGAACTTTGATGCTTTTTACATGTTCATAAACATTTGAACTTAGTTATTGTAGTTTTGATACGAAGATCTTCTGTTTTTTGACTCGGGTTGTAAATAGATAGTTGATCATAAACTGAGTCAAAATGTTTGTGCTATTGCTGTGTTTTTGTTTAATATTTTTCTTTTTATTCTGAAGTTTTATTTGATTTTAGGATCTGCATGACTGGTTTAACACTATTGATTGCTTCTACTGATTGCTGAAAATAAGTTCTGGATCTGATTTTAATCTATTAAGATTTTCATGTACATTCAT 1842 0.3909 CLTQKQGRVEKKVKGLVDLSVKQKSSRSFHLSIKGSHKNALNLLLFLLPNHSHTMPRACFQKLVLPPTLQSRQLRIPDNFLRKYGTQLSTVATLTVPDGSVWRIGLKKADNRIWFVDGWQDFVQRYSIGVGYFLVFMYEGNSSFIVHIFNLTTSEVNYQSAMRNHNEGPCFANYHHIFDDMEDVDSFDFSDLSPPYLSSGALQNKGFTGSVDQLTPGKSHTPALQNLFNGGSKLNRVNWGDGGNAFSSKGANSQGNQSTRDIGVQFNAVEFKRSTDELKLRYSNEVAVNKTAKKKRKSETHGEEPSGENEEEVEMRYRFYESASARKRTVTAEERERAINASKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQLSNGRQWSVRCLYRGGRAKLSQGWFEFTVENNLGEGDVCVFELLRMKEVVLQVTVFRVTEDAGLLNSPELLQQSQNMSHTKLLNPHLQHRVSTTKLIRN 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03654 487 MobiDBLite consensus disorder prediction 241 259 - -
Pste1g03654 487 SMART B3_2 352 447 IPR003340 GO:0003677
Pste1g03654 487 SMART B3_2 60 152 IPR003340 GO:0003677
Pste1g03654 487 SUPERFAMILY DNA-binding pseudobarrel domain 345 446 IPR015300 -
Pste1g03654 487 Gene3D - 53 153 IPR015300 -
Pste1g03654 487 SUPERFAMILY DNA-binding pseudobarrel domain 56 150 IPR015300 -
Pste1g03654 487 CDD B3_DNA 350 445 IPR003340 GO:0003677
Pste1g03654 487 Pfam B3 DNA binding domain 62 150 IPR003340 GO:0003677
Pste1g03654 487 Pfam B3 DNA binding domain 355 445 IPR003340 GO:0003677
Pste1g03654 487 MobiDBLite consensus disorder prediction 239 259 - -
Pste1g03654 487 Gene3D - 329 449 IPR015300 -
Pste1g03654 487 MobiDBLite consensus disorder prediction 289 313 - -
Pste1g03654 487 CDD B3_DNA 59 150 IPR003340 GO:0003677
Pste1g03654 487 PANTHER B3 DOMAIN-CONTAINING 55 439 - -
Pste1g03654 487 ProSiteProfiles B3 DNA-binding domain profile. 59 152 IPR003340 GO:0003677
Pste1g03654 487 MobiDBLite consensus disorder prediction 289 304 - -
Pste1g03654 487 ProSiteProfiles B3 DNA-binding domain profile. 352 447 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03654 Pste-Chr1 17518689 17525127 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03654 55 451 B3 DNA Binding Superfamily AT3G18990 49.020 1.15e-125 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste1g03654 B3 3.8e-16 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03654 1 17518689 17525127 Pste1g03654 1 17518689 17525127 ECH