LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g03637	GTGCTTAGTTATTTCCCGCACGGTAAACGACTATCGTCGGACTCGTGTTCGTTCCTTCCTACCTTCGCAAATAACATTGGCCAACCGAACTATCTTCATCACTCACAAAAAAACTCAAATAAAACCAAAATTTTTCGAACCACTACTCTGCCGCAGTTCATGGACTCCGTCGCCGGAGCTCCGTCATCGCCGGTTCCCGCGCCGCCGCGCCCTACTCCGTCGTTCCCCGGCCGAGAGGACTGCTGGAGCGAGGAGGCAACGTTCACGCTCATTGAGGCGTGGGGCCAGCGCTACCTCGAGCTCAACCGCGGCAACCTCCGCCAGAAGCACTGGCAGGAGGTCGCCGACGCCGTCAACCACCGCCACGCCAGCACCTCCGCCAAAAAGCCCTTTCGCACCGACGTCCAGTGCAAGAACCGCATCGACACGCTTAAGAAGAAGTACAAGATCGAAAAGGCTAGGGTTTCCGATTCCTCCGCCGCCGGCACCGGTTACCGTAGTCCCTGGCCGTTCTTCCCCCGCCTCGACGCTCTCATCGGCGACACTTTTCCGGTAAAAAAAGTCTCCCCGCCGGCAGCCGCCAAAGCGCCTCCTCCTCCGCTGGCGTGGATTACCTCTCACCCAGTCGGTCCCCGATCCGGCACGCAGAAACGACCGGCGCCGGCCGCCGCCAGAGACGCGGCCTTCCGCCGGAGTTTCTCTGCGTTTGCCGCCGCCGCCGCCGCAGCGGCGGAAGCTGACAGCGGCGAGTCGGAGGGGTGGCGGTCGAGTAACGGCACCGGGAGTGGGAAAAGGGGGAGAGAGAGTGAGAAAGAATTGGAATTTGAGTACAGAGAAGTTGCTCACGCGATTGAGAGGTTCGGTGATATATATGAGAGAATGGAGAGTATGAAGCAGAGGCAAATGGTGGAGTTGGAGAAACAGAGGATGCAGTTCATTAAGGACTTGGAGTTTCAACGGATGCAGCTTTTCATGGAAACGCAGGTTCAGTTGCAGAAACTCAAGCGCACCAAGCATTCTTCTGGAGCTGTAAATTATTTTCTTTCTTTTGTCACATTTGAAGAAACACTA	1071	0.5696	VLSYFPHGKRLSSDSCSFLPTFANNIGQPNYLHHSQKNSNKTKIFRTTTLPQFMDSVAGAPSSPVPAPPRPTPSFPGREDCWSEEATFTLIEAWGQRYLELNRGNLRQKHWQEVADAVNHRHASTSAKKPFRTDVQCKNRIDTLKKKYKIEKARVSDSSAAGTGYRSPWPFFPRLDALIGDTFPVKKVSPPAAAKAPPPPLAWITSHPVGPRSGTQKRPAPAAARDAAFRRSFSAFAAAAAAAAEADSGESEGWRSSNGTGSGKRGRESEKELEFEYREVAHAIERFGDIYERMESMKQRQMVELEKQRMQFIKDLEFQRMQLFMETQVQLQKLKRTKHSSGAVNYFLSFVTFEETL	357

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g03637	357	MobiDBLite	consensus disorder prediction	247	269	-	-
	Pste1g03637	357	Pfam	Myb/SANT-like DNA-binding domain	79	178	IPR044822	-
	Pste1g03637	357	Gene3D	-	82	150	-	-
	Pste1g03637	357	MobiDBLite	consensus disorder prediction	191	205	-	-
	Pste1g03637	357	MobiDBLite	consensus disorder prediction	189	224	-	-
	Pste1g03637	357	MobiDBLite	consensus disorder prediction	56	77	-	-
	Pste1g03637	357	PANTHER	TRIHELIX TRANSCRIPTION FACTOR ASIL2	64	338	IPR044823	-
	Pste1g03637	357	FunFam	trihelix transcription factor ASIL2	82	150	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g03637	Pste-Chr1	17377200	17381123	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g03637	70	210	Trihelix Transcription Factor Family	AT3G14180	51.773	2.00e-37	137

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Trihelix	Pste1g03637		Myb_DNA-bind_4	3e-25	CL0123