Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03612 ATGTTCTCGTCCTCACTTTTGTTACAAAAAAAGCCTCCTTTCCCGTTTCCCTGCGAGTTGCTTTGTCTCATTCCCCCAGCTACTAACACCATTCTTTCCGCCTTTACCCTCTTCTCATTCTCATCCTCCTCCTCTCATTACTACTTATTATCATTCCCACCCATCTTCACATTCATCACTCCAATCCAAAAATGCACAACGCCATTCAAATATCCCACTTTACTTTTCCATCCCCATAGATCTGAACCACCCGGGATCTCAAAAATATCCAATTTTGATTTCTGGGTCTTGCCCTTCGCCTCATTGGGTATTCACACACGCATTCCTTTTCCGCAGAAGATGGGCTCCAGTGCCAGCAAAGCCACGTCATCATCCTCCTCTTCGGGGAGTTTCAGGAAGAGTCGATCTAAGGGACACCGAGGTTTCCCATCCTATTGTCTGGGAACATCGTCTGGATCTCGTGACATTGATAGTGACGACCAGGTTTGTGATCAGAATAAAGTAAATGGAGATGATGTGACATACACCAGTGGCAATGAAGACTCAGATGAAGGGAAGACTGAGTCTTTTAGAAAGGTTAAATCTGATAAATCTGATGAAGTGCCTTGTGTGCCTTCTAACATTGACCTTGAAGAATGGGGTCATACTGCATCCAGAATTGGTAGCAGCTCTGCACATTCTTCTTCAAATCAGTCCTTGAACCCTTCAAGCCGATTCCTTTCTCGCTTTAGCCTTGTTCCTGGTAACATAAGCTTCAGACTTAGCAGAACCACAAGTTTGGGGTCATCAAGACCTTGCCCAGTTTCTTCAGAGAATCTCTCAATATTTAACAATGAAGATGAAGTTAATCTGCCTCCAGGACTTCCTGGAAGCTTGATCAATAGAAATGAAACTCAACACCATAGTGATTTGCTTAATTCCTCTTTTGCTAGTCAAGTGCCTATTCAGCACCAAGAAGAAGCTTCTAATAGTTTGAGATCTAATGCCCGGGCATTGGTTTCTCCTCGCAACTTGGTTAGCAGTTGCACACATTCTTCTGTTCAGGATGTGGGCAGAGATGGAAATGGTACAAGAGAGGTGCTGAACTTGTTTTCTCCAAGAGTTCATACTGATACAGAAAATATTGAGACTAGACACACTGATAGACGAAATGGAGCCCGAGAGCCTGTTGACCGTAATGTTCGTTTTAGCCGAACATTAAGTGTTGGAAGGCTCCGTGACAGGGTTCTCCGCAGATCAACATTATCAGACTTCACATTTTGCCCTCTACAACGAGAGAGAGAAGTGAGAGATGCTAGTCAAGATAATGGAAGACAAGCTGGGGATAGAGACACAAGAGTGTCAGCTTCCGGTCGTAATGCTGCCAATTCTTCTACACCTAGATATCCTCAATCCAGTACACCTAACTCCTTGTTTGGCATCCAAGACTATGAAGTTGAGACTTCACGAACTAGAGAAACTAGGTATCAGGATCTACTGGAGCATAGGTCCAATTTCCTAGAACGGAGAAGAAGAATACGGTCCCAGGTCCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCCTGTATCTTATCTGGTCAACACAGAAATGGTCGTTGTGCATGCAGAGTTAATACTCGTGATACAAATTCAAGTGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCTTCTCGCCCTTCTGTGTCATCTATCGGTTCTGTTCCTGCACCTAATGAAGTTGTGGAATCCTTGCCTGTCAAATTATACACGAAGTTGCACAAACATCAAGAAGAACCTGTGCAATGTTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGAGAGTTCTGCCTTGTCATCATGAATTTCATACAACATGCATAGACAAGTGGCTGAAGGAGATTCATAGGGTGTGCCCACTATGTCGAGGGGATATCTGTCTATCTGATTCACTGCCAAGGGAGAACTAAGGTGGCCAATTGTTAATCAATATCTCCTCTGAGATACTCATGGCTCCTTTGATCATTCATTGCACATACGCTGATGTGACACCATCAGAAGAAGCACTCTCATTGTTGTCAATGATTATTTACTCCAATTTCTCAATAAACATCAAACCATTGTAGAAATAGAATGATCTACTAGCTCATTCTCCGTCAACAAGTGAAGCAGATGGCCAAAAAAGGTGCGGTGGGGATATTGTTTAATGAAAAATTTTTCCAACATGTTTCAGAAAAAAGGTTCTCTTATGATGTATCCAACATCCTTTTGTTTTGCCCCACTTCTTGTTTAACACATAATTTGGGAAAAAGCATCAGTCAAATGAGCACTTTTGGTCATGGATGAAACTGCAGAATGGCACAGCATCTTTGACCGAATCATTCTTTAACTGTAGACCAGTCAACCGAGCGGCTTCGGAACTACGGCAGTGGTGCATGCGTGTGATGATATCCTTCACTTTTCAGAGGAAAAAGTGAAAAGAAACATTTCAATTGCTCTGTAAATTGAGGGAGACAAGTGGTAGTTGTCTCCTAACAGCACTAGCTACACTGATTTGTTGTACTATTTGGTCTGCCTTGTGCTCTTCCGGTCCATGATCATGATGCAGGGGGTGGTTATAGGATGATTTGCTTCAGTTTTTGGATCACCTGCTTATCTTGAAGTATCAATTTTTTTATTATTATTTGCATAATTTTTCATTATTTTATATTATATTAATGCAGGAACCTTGTACATTTTCCATGTTGTAGTGCCGCCATTCAGTGTCCTCACCTTGTTAGATCACTTATCAGATTATTATTATTATTACTATTATTATTATTATTAAATACAAAATAATACAACCTTTGGACTCATAATAAAAAAAGTTGTCTTGTGTTTTGAACTCAAATTTAAGCAAATGTAACTACTTATGTCTCAAAATACCTTTCATTTAATTACAATCGTAATTCTTTATTCATAATATCAAGTTTTAATGAAGGTGTT 3061 0.408 MFSSSLLLQKKPPFPFPCELLCLIPPATNTILSAFTLFSFSSSSSHYYLLSFPPIFTFITPIQKCTTPFKYPTLLFHPHRSEPPGISKISNFDFWVLPFASLGIHTRIPFPQKMGSSASKATSSSSSSGSFRKSRSKGHRGFPSYCLGTSSGSRDIDSDDQVCDQNKVNGDDVTYTSGNEDSDEGKTESFRKVKSDKSDEVPCVPSNIDLEEWGHTASRIGSSSAHSSSNQSLNPSSRFLSRFSLVPGNISFRLSRTTSLGSSRPCPVSSENLSIFNNEDEVNLPPGLPGSLINRNETQHHSDLLNSSFASQVPIQHQEEASNSLRSNARALVSPRNLVSSCTHSSVQDVGRDGNGTREVLNLFSPRVHTDTENIETRHTDRRNGAREPVDRNVRFSRTLSVGRLRDRVLRRSTLSDFTFCPLQREREVRDASQDNGRQAGDRDTRVSASGRNAANSSTPRYPQSSTPNSLFGIQDYEVETSRTRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCACRVNTRDTNSSDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNEVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCIDKWLKEIHRVCPLCRGDICLSDSLPREN 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03612 681 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 589 672 IPR013083 -
Pste1g03612 681 MobiDBLite consensus disorder prediction 113 205 - -
Pste1g03612 681 MobiDBLite consensus disorder prediction 428 477 - -
Pste1g03612 681 MobiDBLite consensus disorder prediction 113 132 - -
Pste1g03612 681 MobiDBLite consensus disorder prediction 179 199 - -
Pste1g03612 681 SMART ring_2 626 667 IPR001841 -
Pste1g03612 681 MobiDBLite consensus disorder prediction 428 442 - -
Pste1g03612 681 Pfam Ring finger domain 625 668 IPR001841 -
Pste1g03612 681 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 114 680 - -
Pste1g03612 681 SUPERFAMILY RING/U-box 604 674 - -
Pste1g03612 681 FunFam Putative RING zinc finger domain superfamily protein 595 673 - -
Pste1g03612 681 ProSiteProfiles Zinc finger RING-type profile. 626 668 IPR001841 -
Pste1g03612 681 MobiDBLite consensus disorder prediction 449 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03612 Pste-Chr1 17177687 17183191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03612 288 675 C3H Transcription Factor Family AT5G45290 56.188 1.27e-117 361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03612 1 17177687 17183191 Pste1g03612 1 17177687 17183191 ECH
Pste1g03612 1 17177687 17183191 Pste7g00540 7 5041980 5047577 PCT