LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g03611	AGAGAGGTTTCACAAATCAATCAGTCATTTACGTTGGGCCACTTCATTCAGAGTGTATCTGTATGAAGGAAGAAGAAGAAGCAGCAGCGTGACGATGAAGACCTCAAACGACGACGCTTCAACGCAAGATCTCGACCCTCAGAGCGACCACAGCTCCGATTACCTAGCTCAACCTAATTCTCACCCCCAACCCCACCCTCAGCCCCGTCGTCCCCGTGGCTTCGCGGCGGCCCCGCCCACTACCAATTCCGCCCCCAAGGGCAAGAAGGAGAGGGAAAAGGAAAAAGAGCGCACCAAGCTCCGCGAGCGCCACCGCCGTGCCATCACCAGCCGCATGCTCGCCGGACTCCGCCAGTACGGCAATTTCCCCCTGCCGGCGCGTGCCGACATGAACGACGTACTCGCCGCCCTCGCGCGTGAGGCTGGCTGGGTCGTCGACGCCGATGGCACCACCTACCGCCAGTGCCCCCCTCCTTCTCACATGGGGTCATTTGCGACTAGGTCTGTTGAAAGTCAACTCTCTGGAGGTTCTTTGAGGAATCCTTCTGTTAAGGAAACAATTGAGAATCAGACATCTGTGCTTAGAATTGATGAATGCCTGTCACCTGCATCTATTGATTCTGTCGTCATTGCAGGAAGGGACTCCAAGAGTGAAAAATATACAAATGCTAGTCCCATCAATACAGTTGACTGCTTGGAGGCTGATCAGCTTATGCAAGATATTCATTCTGGGGTGCATGAAAATGACTTTACTGGCACGCCATACGTTCCTGTTTATGTAAAGCTTCCAGCTGGTAGTATCAACAAATTTTGCCAGTTGATTGATCCTGAAGGCATTAGGCAGGAACTAATCCATATCAAGTCTTTAAATGTAGACGGTGTTGTTGTTGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGTGCACAGAAATATGTGTGGTCTGGTTATAGGGAGCTTTTTAACATTATTAGAGAATTCAAGTTGAAGTTACAGGTTGTTATGGCATTTCATGAATGTGGAGGAAGTGATTCTAGTGATGCATTGATTTCCCTCCCACAATGGGTTTTGGATATTGGAAAAGACAACCAGGATATATTCTTCACAGATCGTGAAGGACGGAGGAATACTGAATGCCTTTCTTGGGGGATTGACAAAGAGCGAGTTCTGAAAGGCAGAACTGGAATTGAGGTCTATTTTGATATGATGAGAAGCTTTCGGACAGAGTTTGATGACCTGTTTGCAGAAGGTCTGATTTCTGCTGTTGAGGTTGGACTTGGAGCATGTGGAGAGCTGAAATATCCTTCTTTCTCAGAAAGAATGGGATGGAGGTATCCTGGTATCGGTGAGTTTCAGTGCTACGATAAATACCTGCAAAATAGTCTACGCAGAGCAGCCAAATTACGCGGTCATTCTTTCTGGGCTAGAGGACCTGATAATGCTGGACATTACAATTCTATGCCACATGAAACTGGATTCTTTTGTGAGCGAGGTGATTATGACAACTATTATGGACGCTTCTTCTTACATTGGTACTCCCAAACATTAATAGATCATGCAGATAATGTTTTGTCTCTTGCAACCCTTGCTTTCGAGGAAACAAAAATAATTGTCAAGGTAGTGTTCCTGGTTCCTGCTATATACTGGTGGTATAAGACTCCTAGTCATGCAGCTGAGTTGACAGCAGGATATCACAATCCAACAAATCAGGATGGATACTCTCCTGTGTTTGAGGTTCTGAGAAAACATGGTGTCACCTTGAAATTTGTCTGCTTAGGATTTCATCTTTCCAGCCAGGAAGCTAATGAATCATTGATTGATCCAGAGGGTTTGAGTTGGCAGGTGTTAAACTCAGCTTGGGATCGTGGGTTGATGGCTGCTGGAGAGAATGCACTTCTTTGCTACGATAGAGAAGGTTACAAGAGATTGGTTGAGATGGCAAAGCCCAGAAATGATCCTGATCGCCGGCACTTCTCATTCTTTGTTTATCAGCAGCCATCTTTGCTGCAGGCAAATGTTTGCCTGTCTGAATTGGATTTCTTCATCAAGTGCATGCATGGTAAAGATCCTTGGAATTTACTCTGA	2083	0.4638	MKTSNDDASTQDLDPQSDHSSDYLAQPNSHPQPHPQPRRPRGFAAAPPTTNSAPKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQCPPPSHMGSFATRSVESQLSGGSLRNPSVKETIENQTSVLRIDECLSPASIDSVVIAGRDSKSEKYTNASPINTVDCLEADQLMQDIHSGVHENDFTGTPYVPVYVKLPAGSINKFCQLIDPEGIRQELIHIKSLNVDGVVVDCWWGIVEGWSAQKYVWSGYRELFNIIREFKLKLQVVMAFHECGGSDSSDALISLPQWVLDIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLISAVEVGLGACGELKYPSFSERMGWRYPGIGEFQCYDKYLQNSLRRAAKLRGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLIDHADNVLSLATLAFEETKIIVKVVFLVPAIYWWYKTPSHAAELTAGYHNPTNQDGYSPVFEVLRKHGVTLKFVCLGFHLSSQEANESLIDPEGLSWQVLNSAWDRGLMAAGENALLCYDREGYKRLVEMAKPRNDPDRRHFSFFVYQQPSLLQANVCLSELDFFIKCMHGKDPWNLL	662

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g03611	662	Gene3D	Glycosidases	215	660	-	-
	Pste1g03611	662	MobiDBLite	consensus disorder prediction	1	75	-	-
	Pste1g03611	662	PANTHER	BETA-AMYLASE 1, CHLOROPLASTIC	159	656	IPR001554	GO:0000272\|GO:0016161
	Pste1g03611	662	Pfam	Glycosyl hydrolase family 14	241	622	IPR001554	GO:0000272\|GO:0016161
	Pste1g03611	662	MobiDBLite	consensus disorder prediction	1	29	-	-
	Pste1g03611	662	Pfam	BES1/BZR1 plant transcription factor, N-terminal	55	201	IPR008540	-
	Pste1g03611	662	MobiDBLite	consensus disorder prediction	54	75	-	-
	Pste1g03611	662	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	579	601	IPR001554	GO:0000272\|GO:0016161
	Pste1g03611	662	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	302	323	IPR001554	GO:0000272\|GO:0016161
	Pste1g03611	662	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	395	417	IPR001554	GO:0000272\|GO:0016161
	Pste1g03611	662	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	280	298	IPR001554	GO:0000272\|GO:0016161
	Pste1g03611	662	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	541	564	IPR001554	GO:0000272\|GO:0016161
	Pste1g03611	662	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	468	487	IPR001554	GO:0000272\|GO:0016161
	Pste1g03611	662	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	259	273	IPR001554	GO:0000272\|GO:0016161
	Pste1g03611	662	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	523	534	IPR001554	GO:0000272\|GO:0016161
	Pste1g03611	662	SUPERFAMILY	(Trans)glycosidases	219	655	IPR017853	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g03611	Pste-Chr1	17161037	17168431	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g03611	14	655	Glycoside Hydrolase	AT5G45300	65.774	0.0	869

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	BES1	Pste1g03611		Glyco_hydro_14	8.7e-87	CL0058

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste1g03611	1	17161037	17168431	Pste1g03611	1	17161037	17168431	ECH