Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03596 AAAAGAACTGCTCCAATATAAAAGGTGTGTGTTCTTCCTTCCTTAACAACACAGGTCAAGTGTTCTGTATTCCTACTTAGTACCCTTCAGATCTTTCCCATTACTTCCTTTGCCTTGCCATCTTCCTATTCTATCACTGACACAGTGACACTGTTATAGTCTTACAGACACTCAACTCTTGCATTCCATCTTTAGTTCCAGACACGCACTCTAAATCCACAATGAAAAATAACAAAACAGCCCCCACTTCCCGTTTCACTTACTATTTGTGAATCTGCCTATCCTTTTGAATTAGCTACTTTGCTGTTGTTGTTGTTGTTGAGACATGGAAATGGAAGCTTTTTTATGGGATGGTGATATTGATGAAGATGCCCCAAAGAGGAGTAGTGATCGTTTTGAAGGAAACAATGGTGTAATTGGAAGTGGGTGTGGTTCATCTTTCTCTCTGGTTTTGGATAGGGAAAGAGGGGAGCTTGTGGAGGCACCTCTGAAATTGGAAAGGAAGGGGGTGTCTACTGAGAGAAGCACTGAAGCTCTGAAGAGCCATAGTGAGGCAGAGAGGAGGAGGAGGGCAAGGATTAATGCTCATCTTGATACACTTCGCACTGTGATTCCGGGTGCTATGAAGATGGACAAAGCGTCATTACTTGGTGAGGTTATTAGACATTTGAAAGAGCTGGAGAAGAATGCAGCACAAGCTTGTGAAGGTTTGATGATACCAAAGGACAATGATGAAATAAGTGTTGAAGAACAAGAGGGTGGGTTGAATGGTTTTCCTTATTCAATTAGAGCATCACTATGTTGTGAATATAAACCCGGGCTATTGTCTGACATAAGACAAGCACTAGATTCTCTTCATCTTATGATAACAAGAGCAGATATTGCGACCTTGGAAGGAAGGATGAAGAATGTCTTTGTGATTATAAGCGGCAAAGAGCAGAACTTTGAAGATGCTGCATACCGTCAGTGTCTCGCCAGTTCAGTTCACCAAGCTCTTAGGTCTGTGCTCAATAGATTTTCTGTTTCACAGGACATTTTAGGAACTAGAAAAAGAAGGAGGATTTCTATATTCAGTTCATCATCATTGGAAGATTTCTTGTAAGCTCCCTTGTTGAGTATACCTTAAATCCCCATATCTATACCGGTTTAATGTGATGAGGTGAGTGATAATAGCAATTTCATCATGTACAATGTAACTCATGTATACATACTGGAATGTTGTTCTTCCATGATCTGTATTTTGGATATGTACTTCATAGAAGCCAATGGGATATCTTATTCGGGGGCTGGGGCGTACAAATATTTAGGTGCTTTGACAGATTAGTTGATGGAAAACTGATCATAGCATCTTTTGATCATTTGAGCAAGACAAAACCGATCATAGCATCTATTGTTATGAATTATCTTCACTTAATCAATAGAAAGCAAACTTGTACTTTGTTAAACA 1447 0.3967 MEMEAFLWDGDIDEDAPKRSSDRFEGNNGVIGSGCGSSFSLVLDRERGELVEAPLKLERKGVSTERSTEALKSHSEAERRRRARINAHLDTLRTVIPGAMKMDKASLLGEVIRHLKELEKNAAQACEGLMIPKDNDEISVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDSLHLMITRADIATLEGRMKNVFVIISGKEQNFEDAAYRQCLASSVHQALRSVLNRFSVSQDILGTRKRRRISIFSSSSLEDFL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03596 258 MobiDBLite consensus disorder prediction 1 21 - -
Pste1g03596 258 Pfam Helix-loop-helix DNA-binding domain 73 119 IPR011598 GO:0046983
Pste1g03596 258 SMART finulus 75 124 IPR011598 GO:0046983
Pste1g03596 258 MobiDBLite consensus disorder prediction 61 80 - -
Pste1g03596 258 Gene3D - 63 126 IPR036638 GO:0046983
Pste1g03596 258 CDD ACT_UUR-ACR-like 157 224 - -
Pste1g03596 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 118 IPR011598 GO:0046983
Pste1g03596 258 PANTHER TRANSCRIPTION FACTOR BHLH30 40 250 IPR045847 GO:0003700|GO:0006355
Pste1g03596 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 122 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03596 Pste-Chr1 17084417 17086681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03596 56 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 39.594 8.81e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste1g03596 HLH 4.2e-11 No_clan