Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03570 AAAGAACAAAAAGAGAAAAAAACTAATGAAATTGCAGCCGAAAAACCGACAAACAAACTAGGATACCTTAAAACGCATAAGAAACCAAGCAAGACAAGAAAGAGACACATACCCTTCTTTCTCTTGCTCTTTCTCAGACAGACATCAAAAACCATGAATGATTACGAGCATGAAGACCCATTTGTGCGATACCATAAAGAACAAGAGCACCACAGTGATGTGAACAGAAATATACTCTACATCTCCATGCTTTCCTTCCTCACAGTCCTGTTCCTCTTCATCGCCTTCTACCTCTACTGCCGCTGGATCTTCACGCGTCGCTCCCACCACCGCGCCGCCATTCACCGACTCACCCTCGCCGCGATGCACGTCTCCGATGTCAACACCGGCACCACACACAGCCAGGTTGAACCGGCCAACGCAGGACTCGACCCGGCGATCATAGCTTCGCTGCCCACGTTTACAGTCGGGGCCAAGGTTCTTGAAGGTGGCGATGGCGGCGGCGGTGCCACCTCCACGGTGGTGGTGGAGTGTGCCGTGTGCTTGAGTGCCCTAGAAGGAGAAGAAAAGGCCAAGTTGCTTCCAAATTGTAACCACTTTTTCCACGTAGGTTGCATTGAGACGTGGCTGAATTCTCACGCCACGTGTCCTTTGTGTCGAGCTGAGGTCAAACCGCAGCTCAAACCCGAGAACCGCGAGGGCCCCATTACTCTTACTCCTGCATCACGCGTTTTTGATCTTGATGGTGGTGAGTCATCAAAAGATAATGATTCTAGTTCACGCTTGAGTCCGTTTAGAAGGATGCTTAGTAGGGGAAGATCTTCAACAAGAGTTCTACCTACTGGCCGTGATGATGAGCATGCTGATTCTGATCCTGCTAAAGATTTGGAGAGA 894 0.4966 KEQKEKKTNEIAAEKPTNKLGYLKTHKKPSKTRKRHIPFFLLLFLRQTSKTMNDYEHEDPFVRYHKEQEHHSDVNRNILYISMLSFLTVLFLFIAFYLYCRWIFTRRSHHRAAIHRLTLAAMHVSDVNTGTTHSQVEPANAGLDPAIIASLPTFTVGAKVLEGGDGGGGATSTVVVECAVCLSALEGEEKAKLLPNCNHFFHVGCIETWLNSHATCPLCRAEVKPQLKPENREGPITLTPASRVFDLDGGESSKDNDSSSRLSPFRRMLSRGRSSTRVLPTGRDDEHADSDPAKDLER 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03570 298 Pfam Ring finger domain 177 220 IPR001841 -
Pste1g03570 298 FunFam E3 ubiquitin-protein ligase ATL6 131 226 - -
Pste1g03570 298 PANTHER RING-H2 FINGER PROTEIN ATL16 59 227 IPR044600 GO:0016567|GO:0016740
Pste1g03570 298 MobiDBLite consensus disorder prediction 278 298 - -
Pste1g03570 298 CDD RING-H2_EL5-like 177 220 - -
Pste1g03570 298 MobiDBLite consensus disorder prediction 230 298 - -
Pste1g03570 298 SUPERFAMILY RING/U-box 177 227 - -
Pste1g03570 298 ProSiteProfiles Zinc finger RING-type profile. 178 220 IPR001841 -
Pste1g03570 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 226 IPR013083 -
Pste1g03570 298 SMART ring_2 178 219 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03570 Pste-Chr1 16905624 16906557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03570 53 298 C3H Transcription Factor Family AT2G42360 37.970 6.28e-44 148