Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03516 AACGTAACCACTTATGCTACATCTAATAATAACAATCCTCCACCTGTTTTGAAGAGGAAGAGAAACCTCCCAGGAAACCCAGGCATGCTTGTTTCTTTCACCTTAGCTTCTCTATTTTCACTTCATCAATATCTCTTATATAAATTTTATTATGGGAATCTTTGTATTTGCACAGATCCTGAAGCAGAAGTCATAGCCTTATCACCAAAGACCCTGATGGCTACCAATAGATTCTTGTGTGAGACTTGTGGAAAGGGTTTCCAAAGGGATCAAAATCTTCAACTGCATCGACGTGGACACAACCTTCCATGGAAGCTTAAGCAGAGAACGGGGAAGGAAGCAAGGAAGAGGGTTTATGTGTGTCCTGAGAAGAGTTGTGTCCACCATGATCCTTCAAGGGCTCTCGGAGACTTAACAGGGATAAAGAAGCACTTTTGCAGAAAGCACGGTGAAAAGAAATGGAAGTGCGAGAAGTGCTCAAAGCGCTATGCTGTTCAGTCAGATTGGAAAGCACACTCCAAGACTTGTGGTAGCAGAGATTACAAATGTGACTGTGGAACCATCTTTTCAAGGAGAGATAGCTTCATCACTCACAGGGCCTTTTGTGATGCCTTGGCAGAAGAAACAGCTAGGATAAATGCAGCATCAGGCATGAACACCTCATTAGTGAGTAATATTGGTTACAGTACCATAATGGGAACATCCCTAGGACCTAACATGGCAACACATCTTCCTTTAATTTTCAAGCCAGTTTCGAGCACTGAGGAAACAAGTAGCCAGACATCTAGGGGACTACCCCTGTGGATTGGTCAAACATCTTCTCAGGGTCAAGAAACAATGGTCAACACAAATTTGCCTGAGATTCATAAACTTGGGTCTGACACAATCTCACCAACAACATATGGTGGCAACTCATCAATTCTCCAATGCTCTAATCTTCAACCTTGTAGTAACTACCAGCTAAGTTGGGTGTTTGGAACTAAAATTTCAGACACTAACAACCAAGAGCTAACAACTAGAACTACTTCACTTCCTTTAGGAAACGCAAGTGTTCCTTCTTTGTATAGTTCTCAACACCAACCCCACCATACATCTTTGTCAGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTCAAATTGGAGCAACTTCAAGTGACCCTTCATGGCTTGGAAGCTTAGGTTTCAAATGTGGTAACTGTCAAGGTCAAGATGGGAATAATAATCACAAGTTCAGTGACATGTACGGTTCAAGTTTGATGCTCACCACTCTTGGAAATGAAGCAGATAATTCTGCATGTGACATGTCACAAATGAATCCTCACAAACGTAGACACGTACTCATTGAAGAAAGTGGAGGAGGGCAAACGAGGGATTTTCTTGGTGTTGGTGTGCAAAACCATTTGCCACACTTCATCAGTCAACGGGTGGATTTGATTTGA 1446 0.4232 NVTTYATSNNNNPPPVLKRKRNLPGNPGMLVSFTLASLFSLHQYLLYKFYYGNLCICTDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTGKEARKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGSRDYKCDCGTIFSRRDSFITHRAFCDALAEETARINAASGMNTSLVSNIGYSTIMGTSLGPNMATHLPLIFKPVSSTEETSSQTSRGLPLWIGQTSSQGQETMVNTNLPEIHKLGSDTISPTTYGGNSSILQCSNLQPCSNYQLSWVFGTKISDTNNQELTTRTTSLPLGNASVPSLYSSQHQPHHTSLSANMSATALLQKAAQIGATSSDPSWLGSLGFKCGNCQGQDGNNNHKFSDMYGSSLMLTTLGNEADNSACDMSQMNPHKRRHVLIEESGGGQTRDFLGVGVQNHLPHFISQRVDLI 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03516 481 FunFam protein indeterminate-domain 5, chloroplastic-like 132 211 - -
Pste1g03516 481 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
Pste1g03516 481 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Pste1g03516 481 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Pste1g03516 481 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 13 466 IPR031140 -
Pste1g03516 481 FunFam protein indeterminate-domain 12-like 57 125 - -
Pste1g03516 481 Gene3D Classic Zinc Finger 74 101 - -
Pste1g03516 481 Gene3D Classic Zinc Finger 111 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03516 Pste-Chr1 16498448 16500787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03516 14 467 IDZ Gene Family AT1G03840 47.104 5.43e-129 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste1g03516 None None None