Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03474 TTGAGCGGCGCGTGGCGCGTGCTGGCAAGCACGCATCAAAATCTGCCGCTTCAAGCAACAATTTTTGCTAAACTGAGAATTCCTGCAAACGGCAGAGAAGAGGACAACAAACTATCTAGGTTTTTCAAGTTCAACATATCTTCGTTTTCCAATATAGGGTTATTTTCTGCTCGCACTGTTGCCTTACCCTTCAATTGCAATTGGTACAGTGATGCAAAAGAAAACGAGGAAGCTGGCCTCTTGGCTGTAGAAGAAAACCTGCAGTTGGTTGATGCAAAGGTTCAAGATCAACCTGAAGCTTCCTCTGCTCCTGATCCAATAGAAGACACTTCAAATCAAGTCGAAAGTGGGTCAAATCATGCTGAAAATAAGAAGGAAGAGCTGCCTGCTGAGAATAAAATTTTGGAACTTGAGGCTGTTTCAGTTCCACAAGAGAACGCTCAAAATACTCTTAACTCGGTCCCTGCAGAGGCAGATGCTCAGATTTTGGATAGGAGTGAGTGTGAAGAAGCTTCTGGTGTGAAGGTGAAAGCTGATGAATTTCCTCAGAATAATGAGGCTGAGAATAATGATGACATTCATCAAAGTAGTAACGGTGATGTTGAAATTGAGATGGCTGTGGAAGTGAAGCCTGAAGCCTGTGGAGTGGTTGATAGTAAAATGTGTGATAATGGTGACCCTGTTCCTGCAGATCATCACGAGCCTACTATGCCACAACCTACTCCTGGTGATACAAATGCTGAAATTATGAATGTATTGGAAGTCGAGAATAAGGCTGATGAAAAGCAAGCTGCTGAACCTGCTGATAATGGGAATTCAAACTCAAAACACATGTTGTTCTTGGATGCTGACCATTCCTATGATGGTAATGATTCAGGAACAGAGGAGGAGCAGTCGGCATTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAAGAGCATGGAATTCAAACCTCCCAAGTTTTATGGAGAAGGACTAAATTGCCTCAAGCTCTGGAGAGCTGTAACTAGATTGGGCGGCTATGATAAGGTGACTTCGTGTAAGTTATGGCGACAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACCACTGTTTCATGGACTTTCCGGGGATTTTATGAGAAGGTCATTCATACTGTTTGTGATTTCCTACACCAGGCCCTTCTTGATTATGAAAGACATAAAATAAAAGGTGGTGAGCTGAATGTGCCTATTGCTTCTCATCCAGAGCCTATAAATATTGAAAATCAGGCTTCAGCGTCCGGTAGAGCTAGGAGAGATGCTGCAGCACGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTAGGCAATGGTGAAGTTAGTGACCCTATTATTAAGGATAGGAATTCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTCAAAAGCATCAATTTACCCAAACGTAAGAAACCATCTTCACCCTACATGGATAATGCAGTCAAAGCTGCACGCAGTAAACCATCTAAACCACAGTTGGACACAACAGTGATTGATATTGGACCTCCTGCTGATTGGAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTTCTGCGGGAAGAGGTCCGTGTACAGTCAGACCCAGCAGGACGCCTAGTAATAAGTGGTGAGCCTGAGCATCCCAACAATCCTTGGGGCGTGACACCTTTCAAAAAGATTGTTAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCAGTGGTGACGCTACATGGGCAGTTGTTTGTTCGTGTCCCATTTGAACAATCAGAGTAGTGGTCGCTTATGCTTTCATACCTTTCTGACTATGATATATATAGGATAGTTGACCCGGAAACCACGTAGAAGATTTATTTCCGGCTTAGCGTAGCATTTATTTCAAGTTTGAGCTAACTTCAAAATCCTCGTACATGATTTTCTCAAACAATACTATGTAACCTTGTTAATATGAGCCAGGTAGGATTCTGTAATTGCTGAGGATCAATGTTGTAATATTGTAACTTGGTTAGTGAGATTAATTAAACATTTGACCTTTTTAGGTTGGTACTATTACATTTAATCTGCTCTGTTTGCTCCG 2086 0.4276 LSGAWRVLASTHQNLPLQATIFAKLRIPANGREEDNKLSRFFKFNISSFSNIGLFSARTVALPFNCNWYSDAKENEEAGLLAVEENLQLVDAKVQDQPEASSAPDPIEDTSNQVESGSNHAENKKEELPAENKILELEAVSVPQENAQNTLNSVPAEADAQILDRSECEEASGVKVKADEFPQNNEAENNDDIHQSSNGDVEIEMAVEVKPEACGVVDSKMCDNGDPVPADHHEPTMPQPTPGDTNAEIMNVLEVENKADEKQAAEPADNGNSNSKHMLFLDADHSYDGNDSGTEEEQSAFMKELENFFREKSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKVIHTVCDFLHQALLDYERHKIKGGELNVPIASHPEPINIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSVSVQKREKQLKSINLPKRKKPSSPYMDNAVKAARSKPSKPQLDTTVIDIGPPADWKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKIVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03474 594 MobiDBLite consensus disorder prediction 95 127 - -
Pste1g03474 594 MobiDBLite consensus disorder prediction 472 501 - -
Pste1g03474 594 SMART bright_3 296 387 IPR001606 GO:0003677
Pste1g03474 594 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 498 594 IPR002068 -
Pste1g03474 594 FunFam AT-rich interactive domain-containing protein 3 295 405 - -
Pste1g03474 594 Pfam ARID/BRIGHT DNA binding domain 298 378 IPR001606 GO:0003677
Pste1g03474 594 SMART ARID_2 292 393 - -
Pste1g03474 594 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 129 593 IPR045147 GO:0006357
Pste1g03474 594 ProSiteProfiles ARID domain profile. 295 386 IPR001606 GO:0003677
Pste1g03474 594 SUPERFAMILY HSP20-like chaperones 512 590 IPR008978 -
Pste1g03474 594 CDD ACD_sHsps-like 512 589 - -
Pste1g03474 594 Gene3D - 504 594 IPR008978 -
Pste1g03474 594 Pfam Hsp20/alpha crystallin family 514 593 IPR002068 -
Pste1g03474 594 CDD ARID 297 393 - -
Pste1g03474 594 SUPERFAMILY ARID-like 290 379 IPR036431 GO:0003677
Pste1g03474 594 Gene3D - 295 403 IPR036431 GO:0003677
Pste1g03474 594 MobiDBLite consensus disorder prediction 104 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03474 Pste-Chr1 16193207 16200510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03474 276 592 ARID Transcription Factor Family AT1G76510 58.788 1.30e-117 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pste1g03474 HSP20 0.00021 CL0190
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03474 1 16193207 16200510 Pste1g03474 1 16193207 16200510 ECH
Pste1g03474 1 16193207 16200510 Pste7g02047 7 18772046 18778277 PCT