Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03473 ATGAGTACGATGTGCTCAGAACACAAATTGAATTTGCAACTTCAACCCTCTCACCACCCTCTTATCTCTCTCAAGAATTCCCTTGGGGACATCCACATCCCTCCAAGGAAGCTCCTCACACGCCGCTCCCCCGACATGGAAACCCTCCTTCACAGATGTCATTCCCACAATAACGACTCCATCGAATCCTCCTCCGATGACGACGACCCTTATGCATCCGACACTTTTCGCATGTTTGAGTTCAAGGTCCGACGCTGTACTCGCAGCCGGAGCCATGACTGGACAGACTGTCCCTTTGCCCATCCTGGCGAGAAGGCTCGCCGCCGAGACCCTCGCCAGTTTCATTACTCCGGGACAGTCTGTCCTGAGTATCGCCGCGGCCATTGCAGCCTCGGCGATTCTTGTGAGTATTCTCACGGGGTGTTTGAGTGCTGGTTGCACCCTTCTAGGTATAGAACTGAAGCTTGCAAGGATGGGAAGAATTGCAAGAGAAAAGTTTGCTTCTTTGCCCACACCCGTAGCCAACTCAGGGTTTTGCCTCCTCATGAAAATCTTAACAGGAAAAACTGCACCATGTACCCTCATAATCATAACACCAGCCATTGTTGTATGTATGCTCCTTGTTCCTCTTCTACTTTTTCCCCTACTTCCACCCTGTTTGGCATGTCTCATTTTTCTCCTCCTCTCTCACGTCCTTCTTCTCCTAATTCCCCTTTTGAGACCAACCACCAACATGCTGTTGTCAACTATAAGGATTTGTTCTCTAAGCTTATGTGTTCCGTTGAGGCTTTGAATTTAGGTGAGGCTTCGCCTTCTTCAGCTCCTAAGTCTCAGAATTTCTCTTGGCTTGATGTTTCTGAGAATCACAGACATTGTAGTATTCTTTCACCACCCATCACTTCTAGTGGAAGATTTCAAAACAATGGGAATGGGAGATTTTTCAGGGAAGAAAGTGGGTTTGTGGATGATGTCATTGCCCCAGATCTCGCGTGGGTTAATGAGTTGCTGATGTAG 1014 0.4813 MSTMCSEHKLNLQLQPSHHPLISLKNSLGDIHIPPRKLLTRRSPDMETLLHRCHSHNNDSIESSSDDDDPYASDTFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRQFHYSGTVCPEYRRGHCSLGDSCEYSHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHTRSQLRVLPPHENLNRKNCTMYPHNHNTSHCCMYAPCSSSTFSPTSTLFGMSHFSPPLSRPSSPNSPFETNHQHAVVNYKDLFSKLMCSVEALNLGEASPSSAPKSQNFSWLDVSENHRHCSILSPPITSSGRFQNNGNGRFFREESGFVDDVIAPDLAWVNELLM 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03473 337 SMART c3hfinal6 115 141 IPR000571 GO:0046872
Pste1g03473 337 SMART c3hfinal6 150 173 IPR000571 GO:0046872
Pste1g03473 337 FunFam Zinc finger CCCH domain-containing protein 66 73 141 - -
Pste1g03473 337 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 120 140 IPR000571 GO:0046872
Pste1g03473 337 Gene3D - 115 179 - -
Pste1g03473 337 ProSiteProfiles Zinc finger C3H1-type profile. 116 142 IPR000571 GO:0046872
Pste1g03473 337 PANTHER UNKEMPT FAMILY MEMBER 47 336 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03473 Pste-Chr1 16192437 16193450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03473 71 181 C2H2 Transcription Factor Family AT5G12850 64.865 1.09e-51 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste1g03473 zf-CCCH 3.2e-05 CL0537