LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g03462	AACGAACAGCATTGTAAATTCAAATGGTGCAGTTTCCGCGCCTCAACTCTCCTTCTTCAATTTCATACGAGTTTCTCACAATTCGAAAATGACCCCCGCAGTCAGCTACTCACCCCCGCGTTTAAGAATCGCCGTCGATGCTCCCCACGATCCTCTCTTACCCTTTCTCTGGTCTATCAAGAAAGCCCTAGAAGCTTCCGGCGATTCCGCTCCAAATCTCAGTAACTTACTCAGAGACTGCATCAGAAACTTCAAGAACAATGACCAGTACCGAAACGACGTCAGATTCCTCAAGATCTGGCTCCTCTATATGGGAGTTAGTGATAATTTTGACTATGTTTTTAAAGAAATGATGGACAGCAATGTTTGTGCTAATAATTCTTCACTTTATGTGTGGACTGCGAGTTTTTTTGAGTTGAAGGGAAGATTGCACGATGCTCTCACCATCTATCAGCTTGGCATTTCCAGGAATGCAGAGCCAATTGAATGGTTGGAGAAGGCGTGGACCTTATTTCTCAATAGAATTTCTGAAATACAGAATGCTGCTTCAACCCAGAAGGTTGATGATAAAGAATCCAAGAAATTGAAAAATGATGATATTAATCCTTGGGGAACCTCTACCATGGATAGTCTGTTAAAGAAGATATATCCTTTAATAGTGAAATTTGATGTAAGATATTTAATCCTTTGTGGAATGAAGTACCATATAAAGGGCTGTGCTGGACAGGGCGGTTTTGCCCAAGTATATAAGGCTAATGTTGACAGTGATCCTGACAACGTTGTTGCACTAAAGATACAAAAACCAGCTTTCCCTTGGGAATTTTATATTTATCGTCAGCTTGATCTGCGCATCTTAGATAGAGAGAGGTCAAGTTATGGTTTTGCTCAGCGAGTTCATCTCTATTCTGACTGTAGTATACTCATCTGTGACTATTTAGCTAATGGGACACTACAGGATGTGATAAACTCGTATGTGGTCGTAAGAAAATCCATGGAAGAAGTGTTATGCATTTATTACACAATAGAAATGTTACAGATGGTTGAAACTTTGCATGGTGTTGGCTTGATTCATGGTGATTTTAAGCCTGACAATCTGTTAATTCGCTATGCTAGGGGTATTCTTATAGAAGATGGGTTCTTGGACCGAAGTGGTCCTTGGCATGATCAGGGTCTTTGCCTTGTTGATTGGGGTAGAGGGATTGATCTGCATCTCTTTCCAGATCACACACTATTTAAGGGAGATTGCAGAACTTCTGGTTTTCGCTGCATTGAGATGCTAGAGGATAAACCGTGGAAATTTCAGGCAAATGCATATGGCCTTTGTACTATTGTCCATATGATGTTGCATGGTTCCTATATGGAAGTCGTCAAAAAAGAACAATCTGATGGGGGCTATGTGTATCTTCCCAGACTACCCTTTAAACGTTACTGGAACATTGAGCTCTGGAAGACTTTCTTCATTAAGATGCTAAACCAATATCCCCACGATGATGATAGGAGTTTGCTGCAGGACTTGAAGAGGTCCTTCCAAGACTATTTGGGCTCCAATCCGCAGCTTATAAGGAAACTAACGGAGTTACTCTCAAAGCAAAGGGCTTCCTTGTGTTCTGCTTAATGTTTCAAGATCACTACACCACTTTTGTGTTAGCCTTCTTGCAGCTATTAAGCACCTATTATATTCTTGTTATGAAGGAAGTGAAATATACAAATGCACAGTGCAAGCAATCAGGGATTAGATATACAAGGCAAACTTCCTCTGGTTTTTTGTGTAGTTTTCTAGAACATGCTCTTTAACTAGGTAAAAGACTAAGTTTTAGTAGTTAAGATTATAACGCAGTTCAAATTAAATCAAGGGTGGTTACGCTCTTTACTTATCCACTGTAGAGACAAGCTCAGTTTGTGTATGAGCCTGCATAAGCCCTATTTTTTTTTTTCGTTGTGTTGTTTGAGTAAGGTCAGAAATTTGACCTTCTTAAGTAAAGGTGTGTACATAAATGTGCAAATGCAGTGTATTGTAAGAAGGTATAACAGTTGTATTTTGTATACGCTGTTATGTTTATTGCCTGGGGGCATGTATCACGTTTGGATCATCAATAAAATTCTAAGTTCTT	2111	0.3965	MTPAVSYSPPRLRIAVDAPHDPLLPFLWSIKKALEASGDSAPNLSNLLRDCIRNFKNNDQYRNDVRFLKIWLLYMGVSDNFDYVFKEMMDSNVCANNSSLYVWTASFFELKGRLHDALTIYQLGISRNAEPIEWLEKAWTLFLNRISEIQNAASTQKVDDKESKKLKNDDINPWGTSTMDSLLKKIYPLIVKFDVRYLILCGMKYHIKGCAGQGGFAQVYKANVDSDPDNVVALKIQKPAFPWEFYIYRQLDLRILDRERSSYGFAQRVHLYSDCSILICDYLANGTLQDVINSYVVVRKSMEEVLCIYYTIEMLQMVETLHGVGLIHGDFKPDNLLIRYARGILIEDGFLDRSGPWHDQGLCLVDWGRGIDLHLFPDHTLFKGDCRTSGFRCIEMLEDKPWKFQANAYGLCTIVHMMLHGSYMEVVKKEQSDGGYVYLPRLPFKRYWNIELWKTFFIKMLNQYPHDDDRSLLQDLKRSFQDYLGSNPQLIRKLTELLSKQRASLCSA	508

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g03462	508	ProSiteProfiles	Protein kinase domain profile.	205	508	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g03462	508	Pfam	Mad3/BUB1 homology region 1	17	125	IPR013212	-
	Pste1g03462	508	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	326	338	IPR008271	GO:0004672\|GO:0006468
	Pste1g03462	508	Gene3D	Transferase(Phosphotransferase) domain 1	203	505	-	-
	Pste1g03462	508	ProSiteProfiles	BUB1 N-terminal domain profile.	10	163	IPR013212	-
	Pste1g03462	508	PANTHER	MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1	202	502	IPR015661	GO:0007094
	Pste1g03462	508	Pfam	Protein kinase domain	205	423	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g03462	508	SMART	mad3_bub1_i	12	125	IPR013212	-
	Pste1g03462	508	Gene3D	-	11	164	-	-
	Pste1g03462	508	FunFam	Mitotic checkpoint serine/threonine-protein kinase BUB1	203	505	-	-
	Pste1g03462	508	SMART	serkin_6	205	484	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g03462	508	SUPERFAMILY	Protein kinase-like (PK-like)	204	467	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g03462	Pste-Chr1	16136074	16142062	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g03462	212	395	MAP Kinase Kinase Gene Family	AT1G32320	27.604	3.77e-07	50.1

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	BUB	Pste1g03462		Pkinase	4.7e-12	CL0016